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elastix::AffineLogStackTransform< TElastix > Class Template Reference

#include <elxAffineLogStackTransform.h>

Detailed Description

template<class TElastix>
class elastix::AffineLogStackTransform< TElastix >

An affine log transform based on the itkStackTransform.

Definition at line 41 of file elxAffineLogStackTransform.h.

Inheritance diagram for elastix::AffineLogStackTransform< TElastix >:
Inheritance graph
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Public Types

using AffineLogTransformPointer = typename AffineLogTransformType::Pointer
 
using AffineLogTransformType = itk::AffineLogTransform< typename elx::TransformBase< TElastix >::CoordRepType, Self::SpaceDimension >
 
using CombinationTransformType = typename Superclass2::CombinationTransformType
 
using ConstPointer = itk::SmartPointer< const Self >
 
using ContinuousIndexType = typename itk::ContinuousIndex< CoordRepType, SpaceDimension >
 
using CoordRepType = ElastixBase::CoordRepType
 
using DirectionType = typename FixedImageType::DirectionType
 
using FixedImageType = typename TElastix::FixedImageType
 
using IndexType = typename FixedImageType::IndexType
 
using InputPointType = typename AffineLogTransformType::InputPointType
 
using ITKBaseType = typename Superclass2::ITKBaseType
 
using MovingImageType = typename TElastix::MovingImageType
 
using ParameterMapType = typename TElastix::ParameterMapType
 
using Pointer = itk::SmartPointer< Self >
 
using PointType = typename FixedImageType::PointType
 
using ReducedDimensionAffineLogTransformBasePointer = typename ReducedDimensionAffineLogTransformBaseType::Pointer
 
using ReducedDimensionAffineLogTransformBaseType = itk::AffineLogTransform< typename elx::TransformBase< TElastix >::CoordRepType, Self::ReducedSpaceDimension >
 
using ReducedDimensionContinuousIndexType = typename itk::ContinuousIndex< CoordRepType, ReducedSpaceDimension >
 
using ReducedDimensionDirectionType = typename ReducedDimensionImageType::DirectionType
 
using ReducedDimensionImageType = itk::Image< PixelType, Self::ReducedSpaceDimension >
 
using ReducedDimensionIndexType = typename ReducedDimensionRegionType::IndexType
 
using ReducedDimensionInputPointType = typename ReducedDimensionAffineLogTransformBaseType::InputPointType
 
using ReducedDimensionOriginType = typename ReducedDimensionImageType::PointType
 
using ReducedDimensionOutputVectorType = typename ReducedDimensionAffineLogTransformBaseType::OutputVectorType
 
using ReducedDimensionPointType = typename ReducedDimensionImageType::PointType
 
using ReducedDimensionRegionType = itk::ImageRegion< Self::ReducedSpaceDimension >
 
using ReducedDimensionSizeType = typename ReducedDimensionImageType::SizeType
 
using ReducedDimensionSpacingType = typename ReducedDimensionImageType::SpacingType
 
using RegionType = typename FixedImageType::RegionType
 
using ScalesType = typename OptimizerType::ScalesType
 
using Self = AffineLogStackTransform
 
using SizeType = typename FixedImageType::SizeType
 
using SpacingType = typename FixedImageType::SpacingType
 
using Superclass1 = itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
 
using Superclass2 = elx::TransformBase< TElastix >
 
- Public Types inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
using ConstPointer = SmartPointer< const Self >
 
using CurrentTransformConstPointer = typename CurrentTransformType::ConstPointer
 
using CurrentTransformInverseTransformBasePointer = typename CurrentTransformType::InverseTransformBasePointer
 
using CurrentTransformInverseTransformBaseType = typename CurrentTransformType::InverseTransformBaseType
 
using CurrentTransformPointer = typename CurrentTransformType::Pointer
 
using CurrentTransformType = Superclass
 
using InitialTransformConstPointer = typename InitialTransformType::ConstPointer
 
using InitialTransformInverseTransformBasePointer = typename InitialTransformType::InverseTransformBasePointer
 
using InitialTransformInverseTransformBaseType = typename InitialTransformType::InverseTransformBaseType
 
using InitialTransformPointer = typename InitialTransformType::Pointer
 
using InitialTransformType = Superclass
 
using InverseTransformBaseType = typename Superclass::InverseTransformBaseType
 
using Pointer = SmartPointer< Self >
 
using Self = AdvancedCombinationTransform
 
using Superclass = AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
 
using TransformType = typename Superclass::TransformType
 
using TransformTypeConstPointer = typename TransformType::ConstPointer
 
using TransformTypePointer = typename TransformType::Pointer
 
- Public Types inherited from itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >
using ConstPointer = SmartPointer< const Self >
 
using InternalMatrixType = typename SpatialJacobianType::InternalMatrixType
 
using InverseTransformBaseType = typename Superclass::InverseTransformBaseType
 
using JacobianOfSpatialHessianType = std::vector< SpatialHessianType >
 
using JacobianOfSpatialJacobianType = std::vector< SpatialJacobianType >
 
using MovingImageGradientType = OutputCovariantVectorType
 
using MovingImageGradientValueType = typename MovingImageGradientType::ValueType
 
using NonZeroJacobianIndicesType = std::vector< unsigned long >
 
using Pointer = SmartPointer< Self >
 
using Self = AdvancedTransform
 
using SpatialHessianType = FixedArray< Matrix< ScalarType, InputSpaceDimension, InputSpaceDimension >, OutputSpaceDimension >
 
using SpatialJacobianType = Matrix< ScalarType, OutputSpaceDimension, InputSpaceDimension >
 
using Superclass = Transform< TScalarType, NInputDimensions, NOutputDimensions >
 
using TransformType = Transform< TScalarType, NInputDimensions, NOutputDimensions >
 
using TransformTypeConstPointer = typename TransformType::ConstPointer
 
using TransformTypePointer = typename TransformType::Pointer
 
- Public Types inherited from elastix::TransformBase< TElastix >
using CombinationTransformType = itk::AdvancedCombinationTransform< CoordRepType, Self::FixedImageDimension >
 
using CommandLineArgumentMapType = Configuration ::CommandLineArgumentMapType
 
using CommandLineEntryType = Configuration ::CommandLineEntryType
 
using ComponentDescriptionType = ComponentDatabase::ComponentDescriptionType
 
using CoordRepType = ElastixBase::CoordRepType
 
using DeformationFieldImageType = itk::Image< VectorPixelType, FixedImageDimension >
 
using FixedImageType = typename TElastix::FixedImageType
 
using InitialTransformType = typename CombinationTransformType::InitialTransformType
 
using InputPointType = typename ITKBaseType::InputPointType
 
using ITKBaseType = CombinationTransformType
 
using ITKRegistrationType = typename RegistrationType::ITKBaseType
 
using MovingImageType = typename TElastix::MovingImageType
 
using OptimizerType = typename ITKRegistrationType::OptimizerType
 
using OutputPointType = typename ITKBaseType::OutputPointType
 
using ParameterMapType = typename TElastix::ParameterMapType
 
using ParametersType = itk::OptimizerParameters< ValueType >
 
using ProgressCommandType = elx::ProgressCommand
 
using PtrToCreator = ComponentDatabase::PtrToCreator
 
using RegistrationType = typename ElastixType::RegistrationBaseType
 
using ScalesType = typename OptimizerType::ScalesType
 
using Self = TransformBase
 
using SpatialJacobianDeterminantImageType = itk::Image< float, FixedImageDimension >
 
using SpatialJacobianMatrixImageType = itk::Image< itk::Matrix< float, MovingImageDimension, FixedImageDimension >, FixedImageDimension >
 
using Superclass = BaseComponentSE< TElastix >
 
using ValueType = double
 
using VectorPixelType = itk::Vector< float, FixedImageDimension >
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
using ConfigurationPointer = Configuration::Pointer
 
using ElastixType = TElastix
 
using RegistrationType = typename ElastixType::RegistrationBaseType
 
using Self = BaseComponentSE
 
using Superclass = BaseComponent
 

Public Member Functions

int BeforeAll () override
 
void BeforeRegistration () override
 
 elxClassNameMacro ("AffineLogStackTransform")
 
virtual const char * GetClassName () const
 
 ITK_DISALLOW_COPY_AND_MOVE (AffineLogStackTransform)
 
 itkStaticConstMacro (ReducedSpaceDimension, unsigned int, Superclass2::FixedImageDimension - 1)
 
 itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
 
void ReadFromFile () override
 
virtual void SetScales ()
 
- Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
void EvaluateJacobianWithImageGradientProduct (const InputPointType &inputPoint, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
 
virtual const char * GetClassName () const
 
const FixedParametersType & GetFixedParameters () const override
 
bool GetHasNonZeroSpatialHessian () const override
 
bool GetInverse (Self *inverse) const
 
void GetJacobian (const InputPointType &inputPoint, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
 
void GetJacobianOfSpatialHessian (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
 
void GetJacobianOfSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
 
void GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
 
void GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
 
const TransformTypePointer GetNthTransform (SizeValueType n) const
 
NumberOfParametersType GetNumberOfNonZeroJacobianIndices () const override
 
NumberOfParametersType GetNumberOfParameters () const override
 
SizeValueType GetNumberOfTransforms () const
 
const ParametersType & GetParameters () const override
 
void GetSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh) const override
 
void GetSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj) const override
 
TransformCategoryEnum GetTransformCategory () const override
 
virtual bool GetUseAddition () const
 
virtual bool GetUseComposition () const
 
bool HasNonZeroJacobianOfSpatialHessian () const
 
bool IsLinear () const override
 
 ITK_DISALLOW_COPY_AND_MOVE (AdvancedCombinationTransform)
 
 itkGetModifiableObjectMacro (CurrentTransform, CurrentTransformType)
 
 itkGetModifiableObjectMacro (InitialTransform, InitialTransformType)
 
 itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)
 
void SetCurrentTransform (CurrentTransformType *_arg)
 
void SetFixedParameters (const FixedParametersType &fixedParam) override
 
void SetInitialTransform (InitialTransformType *_arg)
 
void SetParameters (const ParametersType &param) override
 
void SetParametersByValue (const ParametersType &param) override
 
void SetUseAddition (bool _arg)
 
void SetUseComposition (bool _arg)
 
OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &) const override
 
OutputPointType TransformPoint (const InputPointType &point) const override
 
OutputVectorType TransformVector (const InputVectorType &) const override
 
OutputVnlVectorType TransformVector (const InputVnlVectorType &) const override
 
- Public Member Functions inherited from itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >
void ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const override
 
virtual void EvaluateJacobianWithImageGradientProduct (const InputPointType &inputPoint, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual const char * GetClassName () const
 
virtual bool GetHasNonZeroJacobianOfSpatialHessian () const
 
virtual bool GetHasNonZeroSpatialHessian () const
 
virtual void GetJacobian (const InputPointType &inputPoint, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const =0
 
virtual void GetJacobianOfSpatialHessian (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const =0
 
virtual void GetJacobianOfSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const =0
 
virtual void GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const =0
 
virtual void GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const =0
 
virtual NumberOfParametersType GetNumberOfNonZeroJacobianIndices () const
 
virtual void GetSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh) const =0
 
virtual void GetSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj) const =0
 
 ITK_DISALLOW_COPY_AND_MOVE (AdvancedTransform)
 
 itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)
 
 itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)
 
- Public Member Functions inherited from elastix::TransformBase< TElastix >
int BeforeAllTransformix ()
 
void ComputeAndWriteSpatialJacobianDeterminantImage () const
 
void ComputeAndWriteSpatialJacobianMatrixImage () const
 
SpatialJacobianDeterminantImageType::Pointer ComputeSpatialJacobianDeterminantImage () const
 
SpatialJacobianMatrixImageType::Pointer ComputeSpatialJacobianMatrixImage () const
 
void CreateTransformParametersMap (const ParametersType &param, ParameterMapType &parameterMap, const bool includeDerivedTransformParameters=true) const
 
ITKBaseTypeGetAsITKBaseType ()
 
const ITKBaseTypeGetAsITKBaseType () const
 
virtual const char * GetClassName () const
 
 ITK_DISALLOW_COPY_AND_MOVE (TransformBase)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void ReadFromFile ()
 
void ReadInitialTransformFromFile (const char *transformParameterFileName)
 
void SetFinalParameters ()
 
void SetInitialTransform (InitialTransformType *_arg)
 
void SetReadWriteTransformParameters (const bool _arg)
 
void SetTransformParametersFileName (const char *filename)
 
template<typename TMesh >
TMesh::Pointer TransformMesh (const TMesh &mesh) const
 
void TransformPoints () const
 
void WriteToFile (xl::xoutsimple &transformationParameterInfo, const ParametersType &param) const
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void AddTargetCellToIterationInfo (const char *const name)
 
ConfigurationGetConfiguration () const
 
ElastixTypeGetElastix () const
 
xl::xoutbaseGetIterationInfoAt (const char *const name)
 
RegistrationTypeGetRegistration () const
 
 ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)
 
int RemoveTargetCellFromIterationInfo (const char *const name)
 
void SetConfiguration (Configuration *_arg)
 
void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration ()
 
virtual void AfterEachIterationBase ()
 
virtual void AfterEachResolution ()
 
virtual void AfterEachResolutionBase ()
 
virtual void AfterRegistration ()
 
virtual void AfterRegistrationBase ()
 
virtual int BeforeAll ()
 
virtual int BeforeAllBase ()
 
virtual void BeforeEachResolution ()
 
virtual void BeforeEachResolutionBase ()
 
virtual void BeforeRegistration ()
 
virtual void BeforeRegistrationBase ()
 
virtual const char * elxGetClassName () const
 
const char * GetComponentLabel () const
 
 ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)
 
 itkTypeMacroNoParent (BaseComponent)
 
void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
static Pointer New ()
 
- Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())
 
static void InitializeElastixExecutable ()
 
static bool IsElastixLibrary ()
 

Protected Member Functions

 AffineLogStackTransform ()
 
virtual bool ReadCenterOfRotationPoint (ReducedDimensionInputPointType &rotationPoint) const
 
 ~AffineLogStackTransform () override=default
 
- Protected Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
 AdvancedCombinationTransform ()
 
void EvaluateJacobianWithImageGradientProductNoCurrentTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
 
void EvaluateJacobianWithImageGradientProductNoInitialTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
 
void EvaluateJacobianWithImageGradientProductUseAddition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
 
void EvaluateJacobianWithImageGradientProductUseComposition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
 
void GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
 
void GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
 
void GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianUseAddition (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianUseAddition (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianUseComposition (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianUseComposition (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianUseAddition (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianUseAddition (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianUseComposition (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianUseComposition (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
 
void GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
 
void GetSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, SpatialHessianType &sh) const
 
void GetSpatialHessianNoInitialTransform (const InputPointType &inputPoint, SpatialHessianType &sh) const
 
void GetSpatialHessianUseAddition (const InputPointType &inputPoint, SpatialHessianType &sh) const
 
void GetSpatialHessianUseComposition (const InputPointType &inputPoint, SpatialHessianType &sh) const
 
void GetSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, SpatialJacobianType &sj) const
 
void GetSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, SpatialJacobianType &sj) const
 
void GetSpatialJacobianUseAddition (const InputPointType &inputPoint, SpatialJacobianType &sj) const
 
void GetSpatialJacobianUseComposition (const InputPointType &inputPoint, SpatialJacobianType &sj) const
 
OutputPointType TransformPointNoCurrentTransform (const InputPointType &point) const
 
OutputPointType TransformPointNoInitialTransform (const InputPointType &point) const
 
OutputPointType TransformPointUseAddition (const InputPointType &point) const
 
OutputPointType TransformPointUseComposition (const InputPointType &point) const
 
void UpdateCombinationMethod ()
 
 ~AdvancedCombinationTransform () override=default
 
- Protected Member Functions inherited from itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >
 AdvancedTransform ()=default
 
 ~AdvancedTransform () override=default
 
- Protected Member Functions inherited from elastix::TransformBase< TElastix >
void AutomaticScalesEstimation (ScalesType &scales) const
 
void AutomaticScalesEstimationStackTransform (const unsigned int numSubTransforms, ScalesType &scales) const
 
bool HasITKTransformParameters () const
 
 TransformBase ()=default
 
 ~TransformBase () override=default
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()=default
 
 ~BaseComponentSE () override=default
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()=default
 
virtual ~BaseComponent ()=default
 

Private Types

using StackTransformType = itk::AffineLogStackTransform< SpaceDimension >
 

Private Member Functions

ParameterMapType CreateDerivedTransformParametersMap () const override
 
unsigned int InitializeAffineLogTransform ()
 
void InitializeTransform ()
 

Private Attributes

 elxOverrideGetSelfMacro
 
ReducedDimensionAffineLogTransformBasePointer m_DummySubTransform
 
unsigned int m_NumberOfSubTransforms
 
double m_StackOrigin
 
double m_StackSpacing
 
const StackTransformType::Pointer m_StackTransform { StackTransformType::New() }
 

Additional Inherited Members

- Protected Attributes inherited from itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >
bool m_HasNonZeroJacobianOfSpatialHessian { true }
 
bool m_HasNonZeroSpatialHessian { true }
 
- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer m_Configuration {}
 
itk::WeakPointer< TElastix > m_Elastix {}
 
RegistrationTypem_Registration {}
 

Member Typedef Documentation

◆ AffineLogTransformPointer

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::AffineLogTransformPointer = typename AffineLogTransformType::Pointer

Definition at line 75 of file elxAffineLogStackTransform.h.

◆ AffineLogTransformType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::AffineLogTransformType = itk::AffineLogTransform<typename elx::TransformBase<TElastix>::CoordRepType, Self::SpaceDimension>

Definition at line 73 of file elxAffineLogStackTransform.h.

◆ CombinationTransformType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::CombinationTransformType = typename Superclass2::CombinationTransformType

Definition at line 98 of file elxAffineLogStackTransform.h.

◆ ConstPointer

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 55 of file elxAffineLogStackTransform.h.

◆ ContinuousIndexType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ContinuousIndexType = typename itk::ContinuousIndex<CoordRepType, SpaceDimension>

Definition at line 122 of file elxAffineLogStackTransform.h.

◆ CoordRepType

template<class TElastix >
using elastix::TransformBase< TElastix >::CoordRepType = ElastixBase::CoordRepType

Elastix typedef's.

Definition at line 153 of file elxTransformBase.h.

◆ DirectionType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::DirectionType = typename FixedImageType::DirectionType

Definition at line 120 of file elxAffineLogStackTransform.h.

◆ FixedImageType

template<class TElastix >
using elastix::TransformBase< TElastix >::FixedImageType = typename TElastix::FixedImageType

Definition at line 154 of file elxTransformBase.h.

◆ IndexType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::IndexType = typename FixedImageType::IndexType

Other typedef's.

Definition at line 115 of file elxAffineLogStackTransform.h.

◆ InputPointType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::InputPointType = typename AffineLogTransformType::InputPointType

Definition at line 76 of file elxAffineLogStackTransform.h.

◆ ITKBaseType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 97 of file elxAffineLogStackTransform.h.

◆ MovingImageType

template<class TElastix >
using elastix::TransformBase< TElastix >::MovingImageType = typename TElastix::MovingImageType

Definition at line 155 of file elxTransformBase.h.

◆ ParameterMapType

template<class TElastix >
using elastix::TransformBase< TElastix >::ParameterMapType = typename TElastix::ParameterMapType

Typedef that is used in the elastix dll version.

Definition at line 199 of file elxTransformBase.h.

◆ Pointer

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::Pointer = itk::SmartPointer<Self>

Definition at line 54 of file elxAffineLogStackTransform.h.

◆ PointType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::PointType = typename FixedImageType::PointType

Definition at line 117 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionAffineLogTransformBasePointer

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionAffineLogTransformBasePointer = typename ReducedDimensionAffineLogTransformBaseType::Pointer

Definition at line 81 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionAffineLogTransformBaseType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionAffineLogTransformBaseType = itk::AffineLogTransform<typename elx::TransformBase<TElastix>::CoordRepType, Self::ReducedSpaceDimension>

The ITK-class for the sub transforms, which have a reduced dimension.

Definition at line 79 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionContinuousIndexType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionContinuousIndexType = typename itk::ContinuousIndex<CoordRepType, ReducedSpaceDimension>

Definition at line 121 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionDirectionType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionDirectionType = typename ReducedDimensionImageType::DirectionType

Definition at line 108 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionImageType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionImageType = itk::Image<PixelType, Self::ReducedSpaceDimension>

Definition at line 102 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionIndexType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionIndexType = typename ReducedDimensionRegionType::IndexType

Definition at line 106 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionInputPointType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionInputPointType = typename ReducedDimensionAffineLogTransformBaseType::InputPointType

Definition at line 84 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionOriginType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionOriginType = typename ReducedDimensionImageType::PointType

Definition at line 109 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionOutputVectorType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionOutputVectorType = typename ReducedDimensionAffineLogTransformBaseType::OutputVectorType

Definition at line 83 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionPointType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionPointType = typename ReducedDimensionImageType::PointType

Definition at line 104 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionRegionType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionRegionType = itk::ImageRegion<Self::ReducedSpaceDimension>

Definition at line 103 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionSizeType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionSizeType = typename ReducedDimensionImageType::SizeType

Definition at line 105 of file elxAffineLogStackTransform.h.

◆ ReducedDimensionSpacingType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::ReducedDimensionSpacingType = typename ReducedDimensionImageType::SpacingType

Definition at line 107 of file elxAffineLogStackTransform.h.

◆ RegionType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::RegionType = typename FixedImageType::RegionType

Definition at line 119 of file elxAffineLogStackTransform.h.

◆ ScalesType

template<class TElastix >
using elastix::TransformBase< TElastix >::ScalesType = typename OptimizerType::ScalesType

Definition at line 190 of file elxTransformBase.h.

◆ Self

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::Self = AffineLogStackTransform

Standard ITK-stuff.

Definition at line 50 of file elxAffineLogStackTransform.h.

◆ SizeType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::SizeType = typename FixedImageType::SizeType

Definition at line 116 of file elxAffineLogStackTransform.h.

◆ SpacingType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::SpacingType = typename FixedImageType::SpacingType

Definition at line 118 of file elxAffineLogStackTransform.h.

◆ StackTransformType

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::StackTransformType = itk::AffineLogStackTransform<SpaceDimension>
private

The deleted copy constructor and assignment operator. Typedef for stack transform.

Definition at line 179 of file elxAffineLogStackTransform.h.

◆ Superclass1

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::Superclass1 = itk::AdvancedCombinationTransform<typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension>

Definition at line 51 of file elxAffineLogStackTransform.h.

◆ Superclass2

template<class TElastix >
using elastix::AffineLogStackTransform< TElastix >::Superclass2 = elx::TransformBase<TElastix>

Definition at line 53 of file elxAffineLogStackTransform.h.

Constructor & Destructor Documentation

◆ AffineLogStackTransform()

template<class TElastix >
elastix::AffineLogStackTransform< TElastix >::AffineLogStackTransform ( )
inlineprotected

The constructor.

Definition at line 153 of file elxAffineLogStackTransform.h.

◆ ~AffineLogStackTransform()

template<class TElastix >
elastix::AffineLogStackTransform< TElastix >::~AffineLogStackTransform ( )
overrideprotecteddefault

The destructor.

Member Function Documentation

◆ BeforeAll()

template<class TElastix >
int elastix::AffineLogStackTransform< TElastix >::BeforeAll ( )
overridevirtual

Execute stuff before anything else is done:

Reimplemented from elastix::BaseComponent.

◆ BeforeRegistration()

template<class TElastix >
void elastix::AffineLogStackTransform< TElastix >::BeforeRegistration ( )
overridevirtual

Execute stuff before the actual registration:

  • Set the stack transform parameters.
  • Set initial sub transforms.
  • Create initial registration parameters.

Reimplemented from elastix::BaseComponent.

◆ CreateDerivedTransformParametersMap()

template<class TElastix >
ParameterMapType elastix::AffineLogStackTransform< TElastix >::CreateDerivedTransformParametersMap ( ) const
overrideprivatevirtual

Creates a map of the parameters specific for this (derived) transform type.

Implements elastix::TransformBase< TElastix >.

◆ elxClassNameMacro()

template<class TElastix >
elastix::AffineLogStackTransform< TElastix >::elxClassNameMacro ( "AffineLogStackTransform< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "AffineStackTransform")

◆ GetClassName()

template<class TElastix >
virtual const char * elastix::AffineLogStackTransform< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::TransformBase< TElastix >.

◆ InitializeAffineLogTransform()

template<class TElastix >
unsigned int elastix::AffineLogStackTransform< TElastix >::InitializeAffineLogTransform ( )
private

Initialize the affine transform.

◆ InitializeTransform()

template<class TElastix >
void elastix::AffineLogStackTransform< TElastix >::InitializeTransform ( )
private

Method initialize the parameters (to 0).

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >
elastix::AffineLogStackTransform< TElastix >::ITK_DISALLOW_COPY_AND_MOVE ( AffineLogStackTransform< TElastix >  )

◆ itkStaticConstMacro() [1/2]

template<class TElastix >
elastix::AffineLogStackTransform< TElastix >::itkStaticConstMacro ( ReducedSpaceDimension  ,
unsigned int  ,
Superclass2::FixedImageDimension -  1 
)

◆ itkStaticConstMacro() [2/2]

template<class TElastix >
elastix::AffineLogStackTransform< TElastix >::itkStaticConstMacro ( SpaceDimension  ,
unsigned int  ,
Superclass2::FixedImageDimension   
)

(Reduced) dimension of the fixed image.

◆ New()

template<class TElastix >
static Pointer elastix::AffineLogStackTransform< TElastix >::New ( )
static

Method for creation through the object factory.

◆ ReadCenterOfRotationPoint()

template<class TElastix >
virtual bool elastix::AffineLogStackTransform< TElastix >::ReadCenterOfRotationPoint ( ReducedDimensionInputPointType rotationPoint) const
protectedvirtual

Try to read the CenterOfRotationPoint from the transform parameter file The CenterOfRotationPoint is already in world coordinates. Transform parameter files generated by elastix version > 3.402 save the center of rotation in this way.

◆ ReadFromFile()

template<class TElastix >
void elastix::AffineLogStackTransform< TElastix >::ReadFromFile ( )
overridevirtual

Function to read transform-parameters from a file.

Reimplemented from elastix::TransformBase< TElastix >.

◆ SetScales()

template<class TElastix >
virtual void elastix::AffineLogStackTransform< TElastix >::SetScales ( )
virtual

Set the scales

  • If AutomaticScalesEstimation is "true" estimate scales
  • If scales are provided by the user use those,
  • Otherwise use some default value This function is called by BeforeRegistration, after the InitializeTransform function is called

Field Documentation

◆ elxOverrideGetSelfMacro

template<class TElastix >
elastix::AffineLogStackTransform< TElastix >::elxOverrideGetSelfMacro
private

Definition at line 167 of file elxAffineLogStackTransform.h.

◆ m_DummySubTransform

template<class TElastix >
ReducedDimensionAffineLogTransformBasePointer elastix::AffineLogStackTransform< TElastix >::m_DummySubTransform
private

Dummy sub transform to be used to set sub transforms of stack transform.

Definition at line 185 of file elxAffineLogStackTransform.h.

◆ m_NumberOfSubTransforms

template<class TElastix >
unsigned int elastix::AffineLogStackTransform< TElastix >::m_NumberOfSubTransforms
private

Stack variables.

Definition at line 188 of file elxAffineLogStackTransform.h.

◆ m_StackOrigin

template<class TElastix >
double elastix::AffineLogStackTransform< TElastix >::m_StackOrigin
private

Definition at line 189 of file elxAffineLogStackTransform.h.

◆ m_StackSpacing

template<class TElastix >
double elastix::AffineLogStackTransform< TElastix >::m_StackSpacing
private

Definition at line 189 of file elxAffineLogStackTransform.h.

◆ m_StackTransform

template<class TElastix >
const StackTransformType::Pointer elastix::AffineLogStackTransform< TElastix >::m_StackTransform { StackTransformType::New() }
private

The Affine stack transform.

Definition at line 182 of file elxAffineLogStackTransform.h.



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