#include <elxFiniteDifferenceGradientDescent.h>

Detailed Description

template<class TElastix>
class elastix::FiniteDifferenceGradientDescent< TElastix >

An optimizer based on the itk::FiniteDifferenceGradientDescentOptimizer.

This class is a wrap around the FiniteDifferenceGradientDescentOptimizer class. It takes care of setting parameters and printing progress information. For more information about the optimisation method, please read the documentation of the FiniteDifferenceGradientDescentOptimizer class.

Watch out for this optimizer; it may be very slow....

The parameters used in this class are:

Parameters:

Optimizer: Select this optimizer as follows:
(Optimizer "FiniteDifferenceGradientDescent")

MaximumNumberOfIterations: The maximum number of iterations in each resolution.
example: (MaximumNumberOfIterations 100 100 50)
Default value: 500.

SP_a: The gain at each iteration is defined by
$\quad a(k) = SP\_a / (SP\_A + k + 1)^{SP\_alpha}$ .
SP_a can be defined for each resolution.
example: (SP_a 3200.0 3200.0 1600.0)
The default value is 400.0. Tuning this variable for you specific problem is recommended.

SP_A: The gain at each iteration is defined by
$\quad a(k) = SP\_a / (SP\_A + k + 1)^{SP\_alpha}$ .
SP_A can be defined for each resolution.
example: (SP_A 50.0 50.0 100.0)
The default/recommended value is 50.0.

SP_alpha: The gain at each iteration is defined by
$\quad a(k) = SP\_a / (SP\_A + k + 1)^{SP\_alpha}$ .
SP_alpha can be defined for each resolution.
example: (SP_alpha 0.602 0.602 0.602)
The default/recommended value is 0.602.

SP_c: The perturbation step size at each iteration is defined by
$\quad c(k) = SP\_c / ( k + 1)^{SP\_gamma}$ .
SP_c can be defined for each resolution.
example: (SP_c 2.0 1.0 1.0)
The default value is 1.0.

SP_gamma: The perturbation step size at each iteration is defined by
$\quad c(k) = SP\_c / ( k + 1)^{SP\_gamma}$ .
SP_gamma can be defined for each resolution.
example: (SP_gamma 0.101 0.101 0.101)
The default/recommended value is 0.101.

ShowMetricValues: Defines whether to compute/show the metric value in each iteration.
This flag can NOT be defined for each resolution.
example: (ShowMetricValues "true" )
Default value: "false". Note that turning this flag on increases computation time.

See also: FiniteDifferenceGradientDescentOptimizer

Definition at line 80 of file elxFiniteDifferenceGradientDescent.h.

Inheritance diagram for elastix::FiniteDifferenceGradientDescent< TElastix >:

[legend]

Public Types
using	ConstPointer = itk::SmartPointer< const Self >

using	ITKBaseType = typename Superclass2::ITKBaseType

using	Pointer = itk::SmartPointer< Self >

using	Self = FiniteDifferenceGradientDescent

enum	StopConditionType

using	Superclass1 = FiniteDifferenceGradientDescentOptimizer

using	Superclass2 = OptimizerBase< TElastix >

Public Types inherited from itk::FiniteDifferenceGradientDescentOptimizer
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = FiniteDifferenceGradientDescentOptimizer

enum	StopConditionType { MaximumNumberOfIterations , MetricError }

using	Superclass = ScaledSingleValuedNonLinearOptimizer

Public Types inherited from itk::ScaledSingleValuedNonLinearOptimizer
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	ScaledCostFunctionPointer = ScaledCostFunctionType::Pointer

using	ScaledCostFunctionType = ScaledSingleValuedCostFunction

using	ScalesType = NonLinearOptimizer::ScalesType

using	Self = ScaledSingleValuedNonLinearOptimizer

using	Superclass = SingleValuedNonLinearOptimizer

Public Types inherited from elastix::OptimizerBase< TElastix >
using	ElastixType = TElastix

using	ITKBaseType = itk::Optimizer

using	ParametersType = typename ITKBaseType::ParametersType

using	RegistrationType = typename ElastixType::RegistrationBaseType

using	Self = OptimizerBase

using	Superclass = BaseComponentSE< TElastix >

Public Types inherited from elastix::BaseComponentSE< TElastix >
using	ConfigurationPointer = Configuration::Pointer

using	ElastixType = TElastix

using	RegistrationType = typename ElastixType::RegistrationBaseType

using	Self = BaseComponentSE

using	Superclass = BaseComponent

Public Member Functions
void	AfterEachIteration () override

void	AfterEachResolution () override

void	AfterRegistration () override

void	BeforeEachResolution () override

void	BeforeRegistration () override

	elxClassNameMacro ("FiniteDifferenceGradientDescent")

virtual const char *	GetClassName () const

	ITK_DISALLOW_COPY_AND_MOVE (FiniteDifferenceGradientDescent)

void	StartOptimization () override

Public Member Functions inherited from itk::FiniteDifferenceGradientDescentOptimizer
virtual void	AdvanceOneStep ()

virtual void	ComputeCurrentValueOff ()

virtual void	ComputeCurrentValueOn ()

virtual const char *	GetClassName () const

virtual bool	GetComputeCurrentValue () const

virtual unsigned long	GetCurrentIteration () const

virtual double	GetGradientMagnitude () const

virtual double	GetLearningRate () const

virtual unsigned long	GetNumberOfIterations () const

virtual double	GetParam_a () const

virtual double	GetParam_A () const

virtual double	GetParam_alpha () const

virtual double	GetParam_c () const

virtual double	GetParam_gamma () const

virtual StopConditionType	GetStopCondition () const

virtual double	GetValue () const

	ITK_DISALLOW_COPY_AND_MOVE (FiniteDifferenceGradientDescentOptimizer)

void	ResumeOptimization ()

virtual void	SetComputeCurrentValue (bool _arg)

virtual void	SetNumberOfIterations (unsigned long _arg)

virtual void	SetParam_a (double _arg)

virtual void	SetParam_A (double _arg)

virtual void	SetParam_alpha (double _arg)

virtual void	SetParam_c (double _arg)

virtual void	SetParam_gamma (double _arg)

void	StartOptimization () override

void	StopOptimization ()

Public Member Functions inherited from itk::ScaledSingleValuedNonLinearOptimizer
virtual const char *	GetClassName () const

const ParametersType &	GetCurrentPosition () const override

virtual bool	GetMaximize () const

virtual const ScaledCostFunctionType *	GetScaledCostFunction ()

virtual const ParametersType &	GetScaledCurrentPosition ()

bool	GetUseScales () const

virtual void	InitializeScales ()

	ITK_DISALLOW_COPY_AND_MOVE (ScaledSingleValuedNonLinearOptimizer)

virtual void	MaximizeOff ()

virtual void	MaximizeOn ()

void	SetCostFunction (CostFunctionType *costFunction) override

virtual void	SetMaximize (bool _arg)

virtual void	SetUseScales (bool arg)

Public Member Functions inherited from elastix::OptimizerBase< TElastix >
void	AfterRegistrationBase () override

void	BeforeEachResolutionBase () override

ITKBaseType *	GetAsITKBaseType ()

const ITKBaseType *	GetAsITKBaseType () const

virtual const char *	GetClassName () const

	ITK_DISALLOW_COPY_AND_MOVE (OptimizerBase)

virtual void	SetCurrentPositionPublic (const ParametersType &param)

virtual void	SetSinusScales (double amplitude, double frequency, unsigned long numberOfParameters)

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void	AddTargetCellToIterationInfo (const char *const name)

Configuration *	GetConfiguration () const

ElastixType *	GetElastix () const

xl::xoutbase &	GetIterationInfoAt (const char *const name)

RegistrationType *	GetRegistration () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)

int	RemoveTargetCellFromIterationInfo (const char *const name)

void	SetConfiguration (Configuration *_arg)

void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration ()

virtual void	AfterEachIterationBase ()

virtual void	AfterEachResolution ()

virtual void	AfterEachResolutionBase ()

virtual void	AfterRegistration ()

virtual void	AfterRegistrationBase ()

virtual int	BeforeAll ()

virtual int	BeforeAllBase ()

virtual void	BeforeEachResolution ()

virtual void	BeforeEachResolutionBase ()

virtual void	BeforeRegistration ()

virtual void	BeforeRegistrationBase ()

virtual const char *	elxGetClassName () const

const char *	GetComponentLabel () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)

	itkTypeMacroNoParent (BaseComponent)

void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::FiniteDifferenceGradientDescentOptimizer
static Pointer	New ()

Static Public Member Functions inherited from itk::ScaledSingleValuedNonLinearOptimizer
static Pointer	New ()

Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto	AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())

static void	InitializeElastixExecutable ()

static bool	IsElastixLibrary ()

Protected Member Functions
	FiniteDifferenceGradientDescent ()

	~FiniteDifferenceGradientDescent () override=default

Protected Member Functions inherited from itk::FiniteDifferenceGradientDescentOptimizer
virtual double	Compute_a (unsigned long k) const

virtual double	Compute_c (unsigned long k) const

	FiniteDifferenceGradientDescentOptimizer ()

void	PrintSelf (std::ostream &os, Indent indent) const override

	~FiniteDifferenceGradientDescentOptimizer () override=default

Protected Member Functions inherited from itk::ScaledSingleValuedNonLinearOptimizer
virtual void	GetScaledDerivative (const ParametersType &parameters, DerivativeType &derivative) const

virtual MeasureType	GetScaledValue (const ParametersType &parameters) const

virtual void	GetScaledValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const

void	PrintSelf (std::ostream &os, Indent indent) const override

	ScaledSingleValuedNonLinearOptimizer ()

void	SetCurrentPosition (const ParametersType &param) override

virtual void	SetScaledCurrentPosition (const ParametersType &parameters)

	~ScaledSingleValuedNonLinearOptimizer () override=default

Protected Member Functions inherited from elastix::OptimizerBase< TElastix >
virtual bool	GetNewSamplesEveryIteration () const

	OptimizerBase ()=default

virtual void	SelectNewSamples ()

	~OptimizerBase () override=default

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default

	~BaseComponentSE () override=default

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default

virtual	~BaseComponent ()=default

Protected Attributes
bool	m_ShowMetricValues

Protected Attributes inherited from itk::FiniteDifferenceGradientDescentOptimizer
bool	m_ComputeCurrentValue { false }

DerivativeType	m_Gradient

double	m_GradientMagnitude { 0.0 }

double	m_LearningRate { 0.0 }

Protected Attributes inherited from itk::ScaledSingleValuedNonLinearOptimizer
ScaledCostFunctionPointer	m_ScaledCostFunction

ParametersType	m_ScaledCurrentPosition

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}

itk::WeakPointer< TElastix >	m_Elastix {}

RegistrationType *	m_Registration {}

Private Attributes
	elxOverrideGetSelfMacro

Member Typedef Documentation

◆ ConstPointer

template<class TElastix >

using elastix::FiniteDifferenceGradientDescent< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 92 of file elxFiniteDifferenceGradientDescent.h.

◆ ITKBaseType

template<class TElastix >

using elastix::FiniteDifferenceGradientDescent< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 114 of file elxFiniteDifferenceGradientDescent.h.

◆ Pointer

template<class TElastix >

using elastix::FiniteDifferenceGradientDescent< TElastix >::Pointer = itk::SmartPointer<Self>

Definition at line 91 of file elxFiniteDifferenceGradientDescent.h.

◆ Self

template<class TElastix >

using elastix::FiniteDifferenceGradientDescent< TElastix >::Self = FiniteDifferenceGradientDescent

Standard ITK.

Definition at line 88 of file elxFiniteDifferenceGradientDescent.h.

◆ Superclass1

template<class TElastix >

using elastix::FiniteDifferenceGradientDescent< TElastix >::Superclass1 = FiniteDifferenceGradientDescentOptimizer

Definition at line 89 of file elxFiniteDifferenceGradientDescent.h.

◆ Superclass2

template<class TElastix >

using elastix::FiniteDifferenceGradientDescent< TElastix >::Superclass2 = OptimizerBase<TElastix>

Definition at line 90 of file elxFiniteDifferenceGradientDescent.h.

Member Enumeration Documentation

◆ StopConditionType

template<class TElastix >

enum itk::FiniteDifferenceGradientDescentOptimizer::StopConditionType

Codes of stopping conditions

Definition at line 73 of file itkFiniteDifferenceGradientDescentOptimizer.h.

Constructor & Destructor Documentation

◆ FiniteDifferenceGradientDescent()

template<class TElastix >

elastix::FiniteDifferenceGradientDescent< TElastix >::FiniteDifferenceGradientDescent ( )

protected

◆ ~FiniteDifferenceGradientDescent()

template<class TElastix >

elastix::FiniteDifferenceGradientDescent< TElastix >::~FiniteDifferenceGradientDescent ( )

overrideprotecteddefault

Member Function Documentation

◆ AfterEachIteration()

template<class TElastix >

void elastix::FiniteDifferenceGradientDescent< TElastix >::AfterEachIteration ( )

overridevirtual

Reimplemented from elastix::BaseComponent.

◆ AfterEachResolution()

template<class TElastix >

void elastix::FiniteDifferenceGradientDescent< TElastix >::AfterEachResolution ( )

overridevirtual

Reimplemented from elastix::BaseComponent.

◆ AfterRegistration()

template<class TElastix >

void elastix::FiniteDifferenceGradientDescent< TElastix >::AfterRegistration ( )

overridevirtual

Reimplemented from elastix::BaseComponent.

◆ BeforeEachResolution()

template<class TElastix >

void elastix::FiniteDifferenceGradientDescent< TElastix >::BeforeEachResolution ( )

overridevirtual

Reimplemented from elastix::BaseComponent.

◆ BeforeRegistration()

template<class TElastix >

void elastix::FiniteDifferenceGradientDescent< TElastix >::BeforeRegistration ( )

overridevirtual

Methods that take care of setting parameters and printing progress information.

Reimplemented from elastix::BaseComponent.

◆ elxClassNameMacro()

template<class TElastix >

elastix::FiniteDifferenceGradientDescent< TElastix >::elxClassNameMacro ( "FiniteDifferenceGradientDescent< TElastix >" )

Name of this class. Use this name in the parameter file to select this specific optimizer.
example: (Optimizer "FiniteDifferenceGradientDescent")

◆ GetClassName()

template<class TElastix >

virtual const char * elastix::FiniteDifferenceGradientDescent< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::FiniteDifferenceGradientDescentOptimizer.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >

elastix::FiniteDifferenceGradientDescent< TElastix >::ITK_DISALLOW_COPY_AND_MOVE ( FiniteDifferenceGradientDescent< TElastix > )

◆ New()

template<class TElastix >

static Pointer elastix::FiniteDifferenceGradientDescent< TElastix >::New ( )

static

Method for creation through the object factory.

◆ StartOptimization()

template<class TElastix >

void elastix::FiniteDifferenceGradientDescent< TElastix >::StartOptimization ( )

override

Check if any scales are set, and set the UseScales flag on or off; after that call the superclass' implementation

Field Documentation

◆ elxOverrideGetSelfMacro

template<class TElastix >

elastix::FiniteDifferenceGradientDescent< TElastix >::elxOverrideGetSelfMacro

private

Definition at line 147 of file elxFiniteDifferenceGradientDescent.h.

◆ m_ShowMetricValues

template<class TElastix >

bool elastix::FiniteDifferenceGradientDescent< TElastix >::m_ShowMetricValues

protected

Definition at line 144 of file elxFiniteDifferenceGradientDescent.h.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Attributes

Member Typedef Documentation

◆ ConstPointer

◆ ITKBaseType

◆ Pointer

◆ Self

◆ Superclass1

◆ Superclass2

Member Enumeration Documentation

◆ StopConditionType

Constructor & Destructor Documentation

◆ FiniteDifferenceGradientDescent()

◆ ~FiniteDifferenceGradientDescent()

Member Function Documentation

◆ AfterEachIteration()

◆ AfterEachResolution()

◆ AfterRegistration()

◆ BeforeEachResolution()

◆ BeforeRegistration()

◆ elxClassNameMacro()

◆ GetClassName()

◆ ITK_DISALLOW_COPY_AND_MOVE()

◆ New()

◆ StartOptimization()

Field Documentation

◆ elxOverrideGetSelfMacro

◆ m_ShowMetricValues