elastix::MissingStructurePenalty< TElastix > Class Template Reference

#include <elxMissingStructurePenalty.h>

Detailed Description

template<class TElastix>
class elastix::MissingStructurePenalty< TElastix >

Computes the (pseudo) volume of the transformed surface mesh of a structure.
A metric based on the itk::MissingStructurePenalty.

Author

F.F. Berendsen, Image Sciences Institute, UMC Utrecht, The Netherlands

Note

If you use the MissingStructurePenalty anywhere we would appreciate if you cite the following article:
F.F. Berendsen, A.N.T.J. Kotte, A.A.C. de Leeuw, I.M. Juergenliemk-Schulz,
M.A. Viergever and J.P.W. Pluim "Registration of structurally dissimilar \n images in MRI-based brachytherapy ", Phys. Med. Biol. 59 (2014) 4033-4045.
http://stacks.iop.org/0031-9155/59/4033 The parameters used in this class are:

Parameters:

Metric: Select this metric as follows:
(Metric "MissingStructurePenalty")

(WriteResultMeshAfterEachIteration "True")

(WriteResultMeshAfterEachResolution "True") The command-line options for input meshes is: -fmesh<[A-Z]><MetricNumber>.

Definition at line 54 of file elxMissingStructurePenalty.h.

Inheritance diagram for elastix::MissingStructurePenalty< TElastix >:

Public Types
using	CellInterfaceType = typename MeshTraitsType::CellType
using	CombinationTransformType = itk::AdvancedCombinationTransform< CoordRepType, Self::FixedImageDimension >
using	ConstPointer = itk::SmartPointer< const Self >
using	CoordRepType = typename OutputPointType::CoordRepType
using	FixedImageType = typename ElastixType::FixedImageType
using	FixedMeshConstPointer = typename FixedMeshType::ConstPointer
using	FixedMeshContainerPointer = typename FixedMeshContainerType::Pointer
using	FixedMeshContainerType = VectorContainer< MeshIdType, FixedMeshConstPointer >
using	FixedMeshPointer = typename FixedMeshType::Pointer
using	FixedMeshType = Mesh< DummyMeshPixelType, FixedPointSetDimension, MeshTraitsType >
using	ImageType = FixedImageType
using	InitialTransformType = typename CombinationTransformType::InitialTransformType
using	ITKBaseType = typename Superclass2::ITKBaseType
using	MappedMeshContainerPointer = typename MappedMeshContainerType::Pointer
using	MappedMeshContainerType = VectorContainer< MeshIdType, FixedMeshPointer >
using	MeshIdType = unsigned int
using	MeshType = FixedMeshType
using	MovingImageType = typename ElastixType::MovingImageType
using	Pointer = itk::SmartPointer< Self >
using	PointSetType = FixedPointSetType
using	Self = MissingStructurePenalty
using	Superclass1 = itk::MissingVolumeMeshPenalty< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetType >
using	Superclass2 = MetricBase< TElastix >
Public Types inherited from itk::MissingVolumeMeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
using	CellInterfaceType = typename MeshTraitsType::CellType
using	ConstPointer = SmartPointer< const Self >
using	CoordRepType = typename OutputPointType::CoordRepType
using	DerivativeValueType = typename DerivativeType::ValueType
using	DummyMeshPixelType = unsigned char
using	FixedMeshConstPointer = typename FixedMeshType::ConstPointer
using	FixedMeshContainerConstPointer = typename FixedMeshContainerType::ConstPointer
using	FixedMeshContainerElementIdentifier = typename FixedMeshContainerType::ElementIdentifier
using	FixedMeshContainerPointer = typename FixedMeshContainerType::Pointer
using	FixedMeshContainerType = VectorContainer< MeshIdType, FixedMeshConstPointer >
using	FixedMeshPointer = typename FixedMeshType::Pointer
using	FixedMeshPointIdentifier = typename FixedMeshType::PointIdentifier
using	FixedMeshType = Mesh< DummyMeshPixelType, FixedPointSetDimension, MeshTraitsType >
using	InputPointType = typename TransformType::InputPointType
using	MappedMeshContainerConstPointer = typename MappedMeshContainerType::ConstPointer
using	MappedMeshContainerPointer = typename MappedMeshContainerType::Pointer
using	MappedMeshContainerType = VectorContainer< MeshIdType, FixedMeshPointer >
using	MeshIdType = unsigned int
using	MeshPointDataContainerConstIteratorType = typename FixedMeshType::PointDataContainerIterator
using	MeshPointDataContainerConstPointer = typename FixedMeshType::PointDataContainerConstPointer
using	MeshPointDataContainerIteratorType = typename MeshPointDataContainerType::Iterator
using	MeshPointDataContainerPointer = typename FixedMeshType::PointDataContainerPointer
using	MeshPointDataContainerType = typename FixedMeshType::PointDataContainer
using	MeshPointsContainerConstIteratorType = typename FixedMeshType::PointsContainerConstIterator
using	MeshPointsContainerConstPointer = typename MeshPointsContainerType::ConstPointer
using	MeshPointsContainerIteratorType = typename FixedMeshType::PointsContainerIterator
using	MeshPointsContainerPointer = typename MeshPointsContainerType::Pointer
using	MeshPointsContainerType = typename FixedMeshType::PointsContainer
using	MeshPointsDerivativeValueType = Array< DerivativeValueType >
using	MeshPointType = typename FixedMeshType::PointType
using	MeshTraitsType = DefaultStaticMeshTraits< DummyMeshPixelType, FixedPointSetDimension, FixedPointSetDimension, CoordRepType >
using	NonZeroJacobianIndicesType = typename TransformType::NonZeroJacobianIndicesType
using	OutputPointType = typename TransformType::OutputPointType
using	Pointer = SmartPointer< Self >
using	Self = MissingVolumeMeshPenalty
using	SubVectorType = itk::Vector< typename VectorType::ValueType, FixedPointSetDimension - 1 >
using	Superclass = SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
using	TransformJacobianType = typename TransformType::JacobianType
using	TransformParametersType = typename TransformType::ParametersType
using	TransformPointer = typename TransformType::Pointer
using	TransformType = AdvancedTransform< CoordinateRepresentationType, Self::FixedPointSetDimension, Self::MovingPointSetDimension >
using	VectorConstPointer = typename VectorType::const_pointer
using	VectorType = typename FixedMeshType::PointType::VectorType
using	VnlVectorType = vnl_vector< CoordRepType >
Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
using	ConstPointer = SmartPointer< const Self >
using	CoordinateRepresentationType = Superclass::ParametersValueType
using	DerivativeValueType = typename DerivativeType::ValueType
using	FixedImageMaskConstPointer = typename FixedImageMaskType::ConstPointer
using	FixedImageMaskPointer = typename FixedImageMaskType::Pointer
using	FixedImageMaskType = SpatialObject< Self::FixedPointSetDimension >
using	FixedPointSetConstPointer = typename FixedPointSetType::ConstPointer
using	FixedPointSetPixelType = typename FixedPointSetType::PixelType
using	FixedPointSetType = TFixedPointSet
using	InputPointType = typename TransformType::InputPointType
using	MovingImageMaskConstPointer = typename MovingImageMaskType::ConstPointer
using	MovingImageMaskPointer = typename MovingImageMaskType::Pointer
using	MovingImageMaskType = SpatialObject< Self::MovingPointSetDimension >
using	MovingPointSetConstPointer = typename MovingPointSetType::ConstPointer
using	MovingPointSetPixelType = typename MovingPointSetType::PixelType
using	MovingPointSetType = TMovingPointSet
using	NonZeroJacobianIndicesType = typename TransformType::NonZeroJacobianIndicesType
using	OutputPointType = typename TransformType::OutputPointType
using	PointDataIterator = typename FixedPointSetType::PointDataContainer::ConstIterator
using	Pointer = SmartPointer< Self >
using	PointIterator = typename FixedPointSetType::PointsContainer::ConstIterator
using	Self = SingleValuedPointSetToPointSetMetric
using	Superclass = SingleValuedCostFunction
using	TransformJacobianType = typename TransformType::JacobianType
using	TransformParametersType = typename TransformType::ParametersType
using	TransformPointer = typename TransformType::Pointer
using	TransformType = AdvancedTransform< CoordinateRepresentationType, Self::FixedPointSetDimension, Self::MovingPointSetDimension >
Public Types inherited from elastix::MetricBase< TElastix >
using	AdvancedMetricType = itk::AdvancedImageToImageMetric< FixedImageType, MovingImageType >
using	CoordinateRepresentationType = typename ITKBaseType::ParametersValueType
using	ElastixType = TElastix
using	FixedImageType = typename ElastixType::FixedImageType
using	FixedPointSetType = itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >
using	FixedPointType = typename FixedImageType::PointType
using	FixedPointValueType = typename FixedPointType::ValueType
using	ImageSamplerBaseType = typename AdvancedMetricType::ImageSamplerType
using	ITKBaseType = itk::SingleValuedCostFunction
using	MeasureType = typename ITKBaseType::MeasureType
using	MovingImageDerivativeScalesType = typename AdvancedMetricType::MovingImageDerivativeScalesType
using	MovingImageType = typename ElastixType::MovingImageType
using	MovingPointSetType = itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >
using	MovingPointType = typename MovingImageType::PointType
using	MovingPointValueType = typename MovingPointType::ValueType
using	RegistrationType = typename ElastixType::RegistrationBaseType
using	Self = MetricBase
using	Superclass = BaseComponentSE< TElastix >
Public Types inherited from elastix::BaseComponentSE< TElastix >
using	ConfigurationPointer = Configuration::Pointer
using	ElastixType = TElastix
using	RegistrationType = typename ElastixType::RegistrationBaseType
using	Self = BaseComponentSE
using	Superclass = BaseComponent

Public Member Functions
void	AfterEachIteration () override
void	AfterEachResolution () override
int	BeforeAllBase () override
void	BeforeRegistration () override
	elxClassNameMacro ("MissingStructurePenalty")
virtual const char *	GetClassName () const
void	Initialize () override
	ITK_DISALLOW_COPY_AND_MOVE (MissingStructurePenalty)
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
unsigned int	ReadMesh (const std::string &meshFileName, typename FixedMeshType::Pointer &mesh)
unsigned int	ReadTransformixPoints (const std::string &filename, typename MeshType::Pointer &mesh)
void	SelectNewSamples () override
void	WriteResultMesh (const char *filename, MeshIdType meshId)
Public Member Functions inherited from itk::MissingVolumeMeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
virtual const char *	GetClassName () const
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const override
virtual const FixedMeshContainerType *	GetFixedMeshContainer ()
MeasureType	GetValue (const TransformParametersType &parameters) const override
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
void	Initialize () override
	ITK_DISALLOW_COPY_AND_MOVE (MissingVolumeMeshPenalty)
	itkGetModifiableObjectMacro (MappedMeshContainer, MappedMeshContainerType)
	itkStaticConstMacro (FixedPointSetDimension, unsigned int, Superclass::FixedPointSetDimension)
	itkStaticConstMacro (MovingPointSetDimension, unsigned int, Superclass::MovingPointSetDimension)
virtual void	SetFixedMeshContainer (const FixedMeshContainerType *_arg)
virtual void	SetMappedMeshContainer (MappedMeshContainerType *_arg)
Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const char *	GetClassName () const
virtual const FixedImageMaskType *	GetFixedImageMask ()
virtual const FixedPointSetType *	GetFixedPointSet ()
virtual const MovingImageMaskType *	GetMovingImageMask ()
virtual const MovingPointSetType *	GetMovingPointSet ()
unsigned int	GetNumberOfParameters () const override
virtual const TransformType *	GetTransform ()
virtual const bool &	GetUseMetricSingleThreaded ()
virtual void	Initialize ()
	ITK_DISALLOW_COPY_AND_MOVE (SingleValuedPointSetToPointSetMetric)
	itkStaticConstMacro (FixedPointSetDimension, unsigned int, TFixedPointSet::PointDimension)
	itkStaticConstMacro (MovingPointSetDimension, unsigned int, TMovingPointSet::PointDimension)
virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)
virtual void	SetFixedPointSet (const FixedPointSetType *_arg)
virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)
virtual void	SetMovingPointSet (const MovingPointSetType *_arg)
virtual void	SetTransform (TransformType *_arg)
void	SetTransformParameters (const ParametersType &parameters) const
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()
Public Member Functions inherited from elastix::MetricBase< TElastix >
void	AfterEachIterationBase () override
void	BeforeEachResolutionBase () override
virtual ImageSamplerBaseType *	GetAdvancedMetricImageSampler () const
virtual bool	GetAdvancedMetricUseImageSampler () const
ITKBaseType *	GetAsITKBaseType ()
const ITKBaseType *	GetAsITKBaseType () const
virtual const char *	GetClassName () const
virtual MeasureType	GetCurrentExactMetricValue () const
virtual bool	GetShowExactMetricValue () const
	ITK_DISALLOW_COPY_AND_MOVE (MetricBase)
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	SelectNewSamples ()
virtual void	SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void	AddTargetCellToIterationInfo (const char *const name)
Configuration *	GetConfiguration () const
ElastixType *	GetElastix () const
xl::xoutbase &	GetIterationInfoAt (const char *const name)
RegistrationType *	GetRegistration () const
	ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)
int	RemoveTargetCellFromIterationInfo (const char *const name)
void	SetConfiguration (Configuration *_arg)
void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration ()
virtual void	AfterEachIterationBase ()
virtual void	AfterEachResolution ()
virtual void	AfterEachResolutionBase ()
virtual void	AfterRegistration ()
virtual void	AfterRegistrationBase ()
virtual int	BeforeAll ()
virtual int	BeforeAllBase ()
virtual void	BeforeEachResolution ()
virtual void	BeforeEachResolutionBase ()
virtual void	BeforeRegistration ()
virtual void	BeforeRegistrationBase ()
virtual const char *	elxGetClassName () const
const char *	GetComponentLabel () const
	ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)
	itkTypeMacroNoParent (BaseComponent)
void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::MissingVolumeMeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
static Pointer	New ()
Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto	AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())
static void	InitializeElastixExecutable ()
static bool	IsElastixLibrary ()

Protected Member Functions
	MissingStructurePenalty ()
	~MissingStructurePenalty () override=default
Protected Member Functions inherited from itk::MissingVolumeMeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
	MissingVolumeMeshPenalty ()
	~MissingVolumeMeshPenalty () override=default
Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
void	PrintSelf (std::ostream &os, Indent indent) const override
	SingleValuedPointSetToPointSetMetric ()=default
	~SingleValuedPointSetToPointSetMetric () override=default
Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType	GetExactValue (const ParametersType &parameters)
	MetricBase ()=default
	~MetricBase () override=default
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default
	~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default
virtual	~BaseComponent ()=default

Private Attributes
	elxOverrideGetSelfMacro
unsigned int	m_NumberOfMeshes

Additional Inherited Members
Protected Types inherited from elastix::MetricBase< TElastix >
using	ExactMetricImageSamplerPointer = typename ExactMetricImageSamplerType::Pointer
using	ExactMetricImageSamplerType = itk::ImageGridSampler< FixedImageType >
using	ExactMetricSampleGridSpacingType = typename ExactMetricImageSamplerType::SampleGridSpacingType
using	ParametersType = typename ITKBaseType::ParametersType
Protected Attributes inherited from itk::MissingVolumeMeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
FixedMeshConstPointer	m_FixedMesh
FixedMeshContainerConstPointer	m_FixedMeshContainer
MappedMeshContainerPointer	m_MappedMeshContainer
Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
FixedImageMaskConstPointer	m_FixedImageMask { nullptr }
FixedPointSetConstPointer	m_FixedPointSet { nullptr }
MovingImageMaskConstPointer	m_MovingImageMask { nullptr }
MovingPointSetConstPointer	m_MovingPointSet { nullptr }
unsigned int	m_NumberOfPointsCounted { 0 }
TransformPointer	m_Transform { nullptr }
bool	m_UseMetricSingleThreaded { true }
Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType	m_CurrentExactMetricValue { 0.0 }
unsigned int	m_ExactMetricEachXNumberOfIterations { 1 }
ExactMetricSampleGridSpacingType	m_ExactMetricSampleGridSpacing
ExactMetricImageSamplerPointer	m_ExactMetricSampler { nullptr }
bool	m_ShowExactMetricValue { false }
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}
itk::WeakPointer< TElastix >	m_Elastix {}
RegistrationType *	m_Registration {}

Member Typedef Documentation

CellInterfaceType

template<class TElastix >

using itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >::CellInterfaceType = typename MeshTraitsType::CellType

Definition at line 94 of file itkMissingStructurePenalty.h.

CombinationTransformType

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::CombinationTransformType = itk::AdvancedCombinationTransform<CoordRepType, Self::FixedImageDimension>

Definition at line 117 of file elxMissingStructurePenalty.h.

ConstPointer

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 68 of file elxMissingStructurePenalty.h.

CoordRepType

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::CoordRepType = typename OutputPointType::CoordRepType

Definition at line 114 of file elxMissingStructurePenalty.h.

FixedImageType

template<class TElastix >

using elastix::MetricBase< TElastix >::FixedImageType = typename ElastixType::FixedImageType

Other typedef's.

Definition at line 89 of file elxMetricBase.h.

FixedMeshConstPointer

template<class TElastix >

using itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >::FixedMeshConstPointer = typename FixedMeshType::ConstPointer

Definition at line 92 of file itkMissingStructurePenalty.h.

FixedMeshContainerPointer

template<class TElastix >

using itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >::FixedMeshContainerPointer = typename FixedMeshContainerType::Pointer

Definition at line 116 of file itkMissingStructurePenalty.h.

FixedMeshContainerType

template<class TElastix >

using itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >::FixedMeshContainerType = VectorContainer<MeshIdType, FixedMeshConstPointer>

Definition at line 115 of file itkMissingStructurePenalty.h.

FixedMeshPointer

template<class TElastix >

using itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >::FixedMeshPointer = typename FixedMeshType::Pointer

Definition at line 93 of file itkMissingStructurePenalty.h.

FixedMeshType

template<class TElastix >

using itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >::FixedMeshType = Mesh<DummyMeshPixelType, FixedPointSetDimension, MeshTraitsType>

Definition at line 89 of file itkMissingStructurePenalty.h.

ImageType

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::ImageType = FixedImageType

Definition at line 136 of file elxMissingStructurePenalty.h.

InitialTransformType

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::InitialTransformType = typename CombinationTransformType::InitialTransformType

Definition at line 118 of file elxMissingStructurePenalty.h.

ITKBaseType

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 123 of file elxMissingStructurePenalty.h.

MappedMeshContainerPointer

template<class TElastix >

using itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >::MappedMeshContainerPointer = typename MappedMeshContainerType::Pointer

Definition at line 121 of file itkMissingStructurePenalty.h.

MappedMeshContainerType

template<class TElastix >

using itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >::MappedMeshContainerType = VectorContainer<MeshIdType, FixedMeshPointer>

Definition at line 120 of file itkMissingStructurePenalty.h.

MeshIdType

template<class TElastix >

using itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >::MeshIdType = unsigned int

Definition at line 114 of file itkMissingStructurePenalty.h.

MeshType

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::MeshType = FixedMeshType

Definition at line 135 of file elxMissingStructurePenalty.h.

MovingImageType

template<class TElastix >

using elastix::MetricBase< TElastix >::MovingImageType = typename ElastixType::MovingImageType

Definition at line 92 of file elxMetricBase.h.

Pointer

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::Pointer = itk::SmartPointer<Self>

Definition at line 67 of file elxMissingStructurePenalty.h.

PointSetType

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::PointSetType = FixedPointSetType

Assuming fixed and moving pointsets are of equal type, which implicitly assumes that the fixed and moving image are of the same type.

Definition at line 134 of file elxMissingStructurePenalty.h.

Self

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::Self = MissingStructurePenalty

Standard ITK-stuff.

Definition at line 63 of file elxMissingStructurePenalty.h.

Superclass1

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::Superclass1 = itk::MissingVolumeMeshPenalty<typename MetricBase<TElastix>::FixedPointSetType, typename MetricBase<TElastix>::MovingPointSetType>

Definition at line 64 of file elxMissingStructurePenalty.h.

Superclass2

template<class TElastix >

using elastix::MissingStructurePenalty< TElastix >::Superclass2 = MetricBase<TElastix>

Definition at line 66 of file elxMissingStructurePenalty.h.

Constructor & Destructor Documentation

MissingStructurePenalty()

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::MissingStructurePenalty ( )

protected

The constructor.

~MissingStructurePenalty()

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::~MissingStructurePenalty ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

AfterEachIteration()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::AfterEachIteration ( )

overridevirtual

Reimplemented from elastix::BaseComponent.

AfterEachResolution()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::AfterEachResolution ( )

overridevirtual

Reimplemented from elastix::BaseComponent.

BeforeAllBase()

template<class TElastix >

int elastix::MissingStructurePenalty< TElastix >::BeforeAllBase ( )

overridevirtual

Do some things before registration:

• Load and set the pointsets.

Reimplemented from elastix::BaseComponent.

BeforeRegistration()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::BeforeRegistration ( )

overridevirtual

Reimplemented from elastix::BaseComponent.

elxClassNameMacro()

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::elxClassNameMacro

(

"MissingStructurePenalty< TElastix >"

)

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "MissingStructurePenalty")

GetClassName()

template<class TElastix >

virtual const char * elastix::MissingStructurePenalty< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

Initialize()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::Initialize ( )

overridevirtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >.

ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::ITK_DISALLOW_COPY_AND_MOVE

(

MissingStructurePenalty< TElastix >

)

itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

New()

template<class TElastix >

static Pointer elastix::MissingStructurePenalty< TElastix >::New ( )

static

Method for creation through the object factory.

ReadMesh()

template<class TElastix >

unsigned int elastix::MissingStructurePenalty< TElastix >::ReadMesh	(	const std::string &	meshFileName,
		typename FixedMeshType::Pointer &	mesh
	)

Function to read the corresponding points.

ReadTransformixPoints()

template<class TElastix >

unsigned int elastix::MissingStructurePenalty< TElastix >::ReadTransformixPoints	(	const std::string &	filename,
		typename MeshType::Pointer &	mesh
	)

SelectNewSamples()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::SelectNewSamples ( )

inlineoverridevirtual

Overwrite to silence warning.

Reimplemented from elastix::MetricBase< TElastix >.

Definition at line 172 of file elxMissingStructurePenalty.h.

WriteResultMesh()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::WriteResultMesh	(	const char *	filename,
		MeshIdType	meshId
	)

Field Documentation

elxOverrideGetSelfMacro

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::elxOverrideGetSelfMacro

private

Definition at line 182 of file elxMissingStructurePenalty.h.

m_NumberOfMeshes

template<class TElastix >

unsigned int elastix::MissingStructurePenalty< TElastix >::m_NumberOfMeshes

private

Definition at line 184 of file elxMissingStructurePenalty.h.