elastix::MultiMetricMultiResolutionRegistration< TElastix > Class Template Reference

#include <elxMultiMetricMultiResolutionRegistration.h>

Detailed Description

template<class TElastix>
class elastix::MultiMetricMultiResolutionRegistration< TElastix >

A registration framework based on the itk::MultiMetricMultiResolutionImageRegistrationMethod.

This MultiMetricMultiResolutionRegistration gives a framework for registration with a multi-resolution approach, using multiple metrics. The metrics can use the same pair of images/image pyramids/interpolators /masks, but also different pairs of fixed/moving images etc. If the metrics use the same moving image and the same moving image pyramid, they can use the same interpolator. If multiple moving images are used, enter multiple interpolators, possibly of the same type: Like this for example:
(Interpolator "BSplineInterpolator" "BSplineInterpolator")
For each metric a different instance of an image sampler can be used:
(ImageSampler "Random" "Random")
or:
(ImageSampler "Random" "Full")
Note, that the number of metrics should always be larger than or equal to the number of fixed/moving images, interpolators, image pyramids etc. Also, when all metrics need an image sampler, for each fixed image pyramid, an image sampler must be provided. In some cases, one sampler can be used for all metrics. This is the case when multiple metrics are desired, but

• 1 fixed image is used, and
• 1 fixed image pyramid is used. This will save a bit of memory and computation time. In general however, it is better to use the same number of samplers as metrics.

The parameters used in this class are:

Parameters:

Registration: Select this registration framework as follows:
(Registration "MultiMetricMultiResolutionRegistration")

NumberOfResolutions: the number of resolutions used.
example: (NumberOfResolutions 4)
The default is 3.

Metric<i>Weight: The weight for the i-th metric, in each resolution.
example: (Metric0Weight 0.5 0.5 0.8)
example: (Metric1Weight 0.5 0.5 0.2)
The default is 1 / numberOfMetrics.

Metric<i>RelativeWeight: The relative weight for the i-th metric, in each resolution.
This is an alternative to the default Metric<i>Weight and can be selected with the parameter UseRelativeWeights. The weight is computed in each iteration based on the magnitude of the metric derivative (gradient) related to that of the first metric . It is done such that the fraction is identical to , so

example: (Metric0RelativeWeight 0.5 0.5 0.8)
example: (Metric1RelativeWeight 0.5 0.5 0.2)
The default is 1 / numberOfMetrics.

Parameters:

UseRelativeWeights: Whether relative weights are used or simple static, fixed weights.
example: (UseRelativeWeights "false" "true")
The default is "false", which means using Metric<i>Weight.

Metric<i>Use: Whether the i-th metric is only computed or also used, in each resolution.
example: (Metric0Use "false" "true")
example: (Metric1Use "true" "false")
The default is "true".

Definition at line 95 of file elxMultiMetricMultiResolutionRegistration.h.

Inheritance diagram for elastix::MultiMetricMultiResolutionRegistration< TElastix >:

Public Types
using	CombinationMetricPointer = typename CombinationMetricType::Pointer
using	CombinationMetricType = CombinationImageToImageMetric< FixedImageType, MovingImageType >
using	ConstPointer = itk::SmartPointer< const Self >
using	ITKBaseType = typename Superclass2::ITKBaseType
using	OptimizerPointer = typename OptimizerType::Pointer
using	Pointer = itk::SmartPointer< Self >
using	RegistrationType = typename Superclass2::RegistrationType
using	Self = MultiMetricMultiResolutionRegistration
using	Superclass1 = itk::MultiMetricMultiResolutionImageRegistrationMethod< typename RegistrationBase< TElastix >::FixedImageType, typename RegistrationBase< TElastix >::MovingImageType >
using	Superclass2 = RegistrationBase< TElastix >
using	UseMaskErosionArrayType = std::vector< bool >
Public Types inherited from itk::MultiMetricMultiResolutionImageRegistrationMethod< RegistrationBase< TElastix >::FixedImageType, RegistrationBase< TElastix >::MovingImageType >
using	CombinationMetricPointer = typename CombinationMetricType::Pointer
using	CombinationMetricType = CombinationImageToImageMetric< FixedImageType, MovingImageType >
using	ConstPointer = SmartPointer< const Self >
using	DataObjectPointer = typename DataObject::Pointer
using	FixedImageConstPointer = typename FixedImageType::ConstPointer
using	FixedImagePyramidPointer = typename FixedImagePyramidType::Pointer
using	FixedImagePyramidType = MultiResolutionPyramidImageFilter< FixedImageType, FixedImageType >
using	FixedImageRegionType = typename FixedImageType::RegionType
using	FixedImageType = RegistrationBase< TElastix >::FixedImageType
using	InterpolatorPointer = typename InterpolatorType::Pointer
using	InterpolatorType = typename MetricType::InterpolatorType
using	MetricPointer = typename MetricType::Pointer
using	MetricType = AdvancedImageToImageMetric< FixedImageType, MovingImageType >
using	MovingImageConstPointer = typename MovingImageType::ConstPointer
using	MovingImagePyramidPointer = typename MovingImagePyramidType::Pointer
using	MovingImagePyramidType = MultiResolutionPyramidImageFilter< MovingImageType, MovingImageType >
using	MovingImageType = RegistrationBase< TElastix >::MovingImageType
using	OptimizerPointer = typename OptimizerType::Pointer
using	OptimizerType = SingleValuedNonLinearOptimizer
using	ParametersType = typename MetricType::TransformParametersType
using	Pointer = SmartPointer< Self >
using	Self = MultiMetricMultiResolutionImageRegistrationMethod
using	Superclass = MultiResolutionImageRegistrationMethod2< RegistrationBase< TElastix >::FixedImageType, RegistrationBase< TElastix >::MovingImageType >
using	TransformOutputConstPointer = typename TransformOutputType::ConstPointer
using	TransformOutputPointer = typename TransformOutputType::Pointer
using	TransformOutputType = DataObjectDecorator< TransformType >
using	TransformPointer = typename TransformType::Pointer
using	TransformType = typename MetricType::AdvancedTransformType
Public Types inherited from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >
using	ConstPointer = SmartPointer< const Self >
using	DataObjectPointer = typename DataObject::Pointer
using	FixedImageConstPointer = typename FixedImageType::ConstPointer
using	FixedImagePyramidPointer = typename FixedImagePyramidType::Pointer
using	FixedImagePyramidType = MultiResolutionPyramidImageFilter< FixedImageType, FixedImageType >
using	FixedImageRegionPyramidType = std::vector< FixedImageRegionType >
using	FixedImageRegionType = typename FixedImageType::RegionType
using	FixedImageType = TFixedImage
using	InterpolatorPointer = typename InterpolatorType::Pointer
using	InterpolatorType = typename MetricType::InterpolatorType
using	MetricPointer = typename MetricType::Pointer
using	MetricType = AdvancedImageToImageMetric< FixedImageType, MovingImageType >
using	MovingImageConstPointer = typename MovingImageType::ConstPointer
using	MovingImagePyramidPointer = typename MovingImagePyramidType::Pointer
using	MovingImagePyramidType = MultiResolutionPyramidImageFilter< MovingImageType, MovingImageType >
using	MovingImageType = TMovingImage
using	OptimizerType = SingleValuedNonLinearOptimizer
using	ParametersType = typename MetricType::TransformParametersType
using	Pointer = SmartPointer< Self >
using	Self = MultiResolutionImageRegistrationMethod2
using	Superclass = ProcessObject
using	TransformOutputConstPointer = typename TransformOutputType::ConstPointer
using	TransformOutputPointer = typename TransformOutputType::Pointer
using	TransformOutputType = DataObjectDecorator< TransformType >
using	TransformPointer = typename TransformType::Pointer
using	TransformType = typename MetricType::AdvancedTransformType
Public Types inherited from elastix::RegistrationBase< TElastix >
using	ElastixType = TElastix
using	FixedImageType = typename ElastixType::FixedImageType
using	ITKBaseType = itk::MultiResolutionImageRegistrationMethod2< FixedImageType, MovingImageType >
using	MovingImageType = typename ElastixType::MovingImageType
using	RegistrationType = typename ElastixType::RegistrationBaseType
using	Self = RegistrationBase
using	Superclass = BaseComponentSE< TElastix >
using	UseMaskErosionArrayType = std::vector< bool >
Public Types inherited from elastix::BaseComponentSE< TElastix >
using	ConfigurationPointer = Configuration::Pointer
using	ElastixType = TElastix
using	RegistrationType = typename ElastixType::RegistrationBaseType
using	Self = BaseComponentSE
using	Superclass = BaseComponent

Public Member Functions
void	AfterEachIteration () override
void	BeforeEachResolution () override
void	BeforeRegistration () override
	elxClassNameMacro ("MultiMetricMultiResolutionRegistration")
virtual const char *	GetClassName () const
	ITK_DISALLOW_COPY_AND_MOVE (MultiMetricMultiResolutionRegistration)
	itkStaticConstMacro (FixedImageDimension, unsigned int, Superclass2::FixedImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, Superclass2::MovingImageDimension)
Public Member Functions inherited from itk::MultiMetricMultiResolutionImageRegistrationMethod< RegistrationBase< TElastix >::FixedImageType, RegistrationBase< TElastix >::MovingImageType >
	elxOverrideSimpleSetMacro (FixedImage, const FixedImageType *)
	elxOverrideSimpleSetMacro (FixedImagePyramid, FixedImagePyramidType *)
	elxOverrideSimpleSetMacro (FixedImageRegion, const FixedImageRegionType)
	elxOverrideSimpleSetMacro (Interpolator, InterpolatorType *)
	elxOverrideSimpleSetMacro (MovingImage, const MovingImageType *)
	elxOverrideSimpleSetMacro (MovingImagePyramid, MovingImagePyramidType *)
virtual const char *	GetClassName () const
virtual CombinationMetricType *	GetCombinationMetric () const
const FixedImageType *	GetFixedImage () const override
virtual const FixedImageType *	GetFixedImage (unsigned int pos) const
FixedImagePyramidType *	GetFixedImagePyramid () override
virtual FixedImagePyramidType *	GetFixedImagePyramid (unsigned int pos) const
const FixedImageRegionType &	GetFixedImageRegion () const override
virtual const FixedImageRegionType &	GetFixedImageRegion (unsigned int pos) const
InterpolatorType *	GetInterpolator () override
virtual InterpolatorType *	GetInterpolator (unsigned int pos) const
const ParametersType &	GetLastTransformParameters () const override
const MovingImageType *	GetMovingImage () const override
virtual const MovingImageType *	GetMovingImage (unsigned int pos) const
MovingImagePyramidType *	GetMovingImagePyramid () override
virtual MovingImagePyramidType *	GetMovingImagePyramid (unsigned int pos) const
ModifiedTimeType	GetMTime () const override
	ITK_DISALLOW_COPY_AND_MOVE (MultiMetricMultiResolutionImageRegistrationMethod)
	itkGetNumberOfMacro (FixedImage)
	itkGetNumberOfMacro (FixedImagePyramid)
	itkGetNumberOfMacro (FixedImageRegion)
	itkGetNumberOfMacro (Interpolator)
	itkGetNumberOfMacro (MovingImage)
	itkGetNumberOfMacro (MovingImagePyramid)
	itkSetNumberOfMacro (FixedImage)
	itkSetNumberOfMacro (FixedImagePyramid)
	itkSetNumberOfMacro (FixedImageRegion)
	itkSetNumberOfMacro (Interpolator)
	itkSetNumberOfMacro (MovingImage)
	itkSetNumberOfMacro (MovingImagePyramid)
virtual void	SetFixedImage (const FixedImageType *_arg, unsigned int pos)
virtual void	SetFixedImagePyramid (FixedImagePyramidType *_arg, unsigned int pos)
virtual void	SetFixedImageRegion (FixedImageRegionType _arg, unsigned int pos)
virtual void	SetInterpolator (InterpolatorType *_arg, unsigned int pos)
void	SetMetric (MetricType *_arg) override
virtual void	SetMovingImage (const MovingImageType *_arg, unsigned int pos)
virtual void	SetMovingImagePyramid (MovingImagePyramidType *_arg, unsigned int pos)
virtual void	StopMultiMetricRegistration ()
Public Member Functions inherited from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >
virtual const char *	GetClassName () const
virtual unsigned long	GetCurrentLevel () const
virtual const FixedImageType *	GetFixedImage ()
virtual const FixedImageRegionType &	GetFixedImageRegion ()
virtual const ParametersType &	GetInitialTransformParameters ()
virtual const ParametersType &	GetInitialTransformParametersOfNextLevel ()
virtual const ParametersType &	GetLastTransformParameters ()
virtual const MovingImageType *	GetMovingImage ()
ModifiedTimeType	GetMTime () const override
virtual unsigned long	GetNumberOfLevels () const
const TransformOutputType *	GetOutput () const
	ITK_DISALLOW_COPY_AND_MOVE (MultiResolutionImageRegistrationMethod2)
	itkGetModifiableObjectMacro (FixedImagePyramid, FixedImagePyramidType)
	itkGetModifiableObjectMacro (Interpolator, InterpolatorType)
	itkGetModifiableObjectMacro (Metric, MetricType)
	itkGetModifiableObjectMacro (MovingImagePyramid, MovingImagePyramidType)
	itkGetModifiableObjectMacro (Optimizer, OptimizerType)
	itkGetModifiableObjectMacro (Transform, TransformType)
virtual DataObjectPointer	MakeOutput (unsigned int idx)
virtual void	SetFixedImage (const FixedImageType *_arg)
virtual void	SetFixedImagePyramid (FixedImagePyramidType *_arg)
virtual void	SetFixedImageRegion (FixedImageRegionType _arg)
virtual void	SetInitialTransformParameters (ParametersType _arg)
virtual void	SetInitialTransformParametersOfNextLevel (ParametersType _arg)
virtual void	SetInterpolator (InterpolatorType *_arg)
virtual void	SetMetric (MetricType *_arg)
virtual void	SetMovingImage (const MovingImageType *_arg)
virtual void	SetMovingImagePyramid (MovingImagePyramidType *_arg)
virtual void	SetNumberOfLevels (unsigned long _arg)
virtual void	SetOptimizer (OptimizerType *_arg)
virtual void	SetTransform (TransformType *_arg)
virtual void	StartRegistration ()
virtual void	StopRegistration ()
Public Member Functions inherited from elastix::RegistrationBase< TElastix >
ITKBaseType *	GetAsITKBaseType ()
const ITKBaseType *	GetAsITKBaseType () const
virtual const char *	GetClassName () const
	ITK_DISALLOW_COPY_AND_MOVE (RegistrationBase)
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual bool	ReadMaskParameters (UseMaskErosionArrayType &useMaskErosionArray, const unsigned int nrOfMasks, const std::string &whichMask, const unsigned int level) const
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void	AddTargetCellToIterationInfo (const char *const name)
Configuration *	GetConfiguration () const
ElastixType *	GetElastix () const
xl::xoutbase &	GetIterationInfoAt (const char *const name)
RegistrationType *	GetRegistration () const
	ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)
int	RemoveTargetCellFromIterationInfo (const char *const name)
void	SetConfiguration (Configuration *_arg)
void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration ()
virtual void	AfterEachIterationBase ()
virtual void	AfterEachResolution ()
virtual void	AfterEachResolutionBase ()
virtual void	AfterRegistration ()
virtual void	AfterRegistrationBase ()
virtual int	BeforeAll ()
virtual int	BeforeAllBase ()
virtual void	BeforeEachResolution ()
virtual void	BeforeEachResolutionBase ()
virtual void	BeforeRegistration ()
virtual void	BeforeRegistrationBase ()
virtual const char *	elxGetClassName () const
const char *	GetComponentLabel () const
	ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)
	itkTypeMacroNoParent (BaseComponent)
void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::MultiMetricMultiResolutionImageRegistrationMethod< RegistrationBase< TElastix >::FixedImageType, RegistrationBase< TElastix >::MovingImageType >
static Pointer	New ()
Static Public Member Functions inherited from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >
static Pointer	New ()
Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto	AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())
static void	InitializeElastixExecutable ()
static bool	IsElastixLibrary ()

Protected Types
using	FixedMaskImagePointer = typename FixedMaskImageType::Pointer
using	FixedMaskImageType = typename ElastixType::FixedMaskType
using	FixedMaskSpatialObjectPointer = typename FixedMaskSpatialObjectType::Pointer
using	FixedMaskSpatialObjectType = itk::ImageMaskSpatialObject< Self::FixedImageDimension >
using	MaskPixelType = typename ElastixType::MaskPixelType
using	MovingMaskImagePointer = typename MovingMaskImageType::Pointer
using	MovingMaskImageType = typename ElastixType::MovingMaskType
using	MovingMaskSpatialObjectPointer = typename MovingMaskSpatialObjectType::Pointer
using	MovingMaskSpatialObjectType = itk::ImageMaskSpatialObject< Self::MovingImageDimension >
Protected Types inherited from itk::MultiMetricMultiResolutionImageRegistrationMethod< RegistrationBase< TElastix >::FixedImageType, RegistrationBase< TElastix >::MovingImageType >
using	FixedImageRegionPyramidType = std::vector< FixedImageRegionType >
Protected Types inherited from elastix::RegistrationBase< TElastix >
using	FixedImagePyramidType = typename ITKBaseType::FixedImagePyramidType
using	FixedMaskErodeFilterPointer = typename FixedMaskErodeFilterType::Pointer
using	FixedMaskErodeFilterType = itk::ErodeMaskImageFilter< FixedMaskImageType >
using	FixedMaskImagePointer = typename FixedMaskImageType::Pointer
using	FixedMaskImageType = typename ElastixType::FixedMaskType
using	FixedMaskSpatialObjectPointer = typename FixedMaskSpatialObjectType::Pointer
using	FixedMaskSpatialObjectType = itk::ImageMaskSpatialObject< Self::FixedImageDimension >
using	MaskPixelType = typename ElastixType::MaskPixelType
using	MovingImagePyramidType = typename ITKBaseType::MovingImagePyramidType
using	MovingMaskErodeFilterPointer = typename MovingMaskErodeFilterType::Pointer
using	MovingMaskErodeFilterType = itk::ErodeMaskImageFilter< MovingMaskImageType >
using	MovingMaskImagePointer = typename MovingMaskImageType::Pointer
using	MovingMaskImageType = typename ElastixType::MovingMaskType
using	MovingMaskSpatialObjectPointer = typename MovingMaskSpatialObjectType::Pointer
using	MovingMaskSpatialObjectType = itk::ImageMaskSpatialObject< Self::MovingImageDimension >

Protected Member Functions
	MultiMetricMultiResolutionRegistration ()
virtual void	SetComponents ()
void	UpdateFixedMasks (unsigned int level)
void	UpdateMovingMasks (unsigned int level)
	~MultiMetricMultiResolutionRegistration () override=default
Protected Member Functions inherited from itk::MultiMetricMultiResolutionImageRegistrationMethod< RegistrationBase< TElastix >::FixedImageType, RegistrationBase< TElastix >::MovingImageType >
virtual void	CheckOnInitialize ()
virtual void	CheckPyramids ()
void	GenerateData () override
void	Initialize () override
	MultiMetricMultiResolutionImageRegistrationMethod ()
virtual void	PrepareAllPyramids ()
void	PrintSelf (std::ostream &os, Indent indent) const override
	~MultiMetricMultiResolutionImageRegistrationMethod () override=default
Protected Member Functions inherited from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >
void	GenerateData () override
virtual void	Initialize ()
	MultiResolutionImageRegistrationMethod2 ()
virtual void	PreparePyramids ()
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual void	SetCurrentLevel (unsigned long _arg)
	~MultiResolutionImageRegistrationMethod2 () override=default
Protected Member Functions inherited from elastix::RegistrationBase< TElastix >
FixedMaskSpatialObjectPointer	GenerateFixedMaskSpatialObject (const FixedMaskImageType *maskImage, bool useMaskErosion, const FixedImagePyramidType *pyramid, unsigned int level) const
MovingMaskSpatialObjectPointer	GenerateMovingMaskSpatialObject (const MovingMaskImageType *maskImage, bool useMaskErosion, const MovingImagePyramidType *pyramid, unsigned int level) const
	RegistrationBase ()=default
	~RegistrationBase () override=default
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default
	~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default
virtual	~BaseComponent ()=default

Protected Attributes
bool	m_ShowExactMetricValue
Protected Attributes inherited from itk::MultiMetricMultiResolutionImageRegistrationMethod< RegistrationBase< TElastix >::FixedImageType, RegistrationBase< TElastix >::MovingImageType >
CombinationMetricPointer	m_CombinationMetric
std::vector< FixedImagePyramidPointer >	m_FixedImagePyramids
std::vector< FixedImageRegionPyramidType >	m_FixedImageRegionPyramids
std::vector< FixedImageRegionType >	m_FixedImageRegions
std::vector< FixedImageConstPointer >	m_FixedImages
std::vector< InterpolatorPointer >	m_Interpolators
ParametersType	m_LastTransformParameters
std::vector< MovingImagePyramidPointer >	m_MovingImagePyramids
std::vector< MovingImageConstPointer >	m_MovingImages
FixedImageRegionType	m_NullFixedImageRegion
bool	m_Stop
Protected Attributes inherited from itk::MultiResolutionImageRegistrationMethod2< TFixedImage, TMovingImage >
ParametersType	m_LastTransformParameters
bool	m_Stop
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}
itk::WeakPointer< TElastix >	m_Elastix {}
RegistrationType *	m_Registration {}

Private Attributes
	elxOverrideGetSelfMacro

Member Typedef Documentation

CombinationMetricPointer

template<class TElastix >

using itk::MultiMetricMultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >::CombinationMetricPointer = typename CombinationMetricType::Pointer

Definition at line 124 of file itkMultiMetricMultiResolutionImageRegistrationMethod.h.

CombinationMetricType

template<class TElastix >

using itk::MultiMetricMultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >::CombinationMetricType = CombinationImageToImageMetric<FixedImageType, MovingImageType>

Extra typedefs

Definition at line 123 of file itkMultiMetricMultiResolutionImageRegistrationMethod.h.

ConstPointer

template<class TElastix >

using elastix::MultiMetricMultiResolutionRegistration< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 114 of file elxMultiMetricMultiResolutionRegistration.h.

FixedMaskImagePointer

template<class TElastix >

using elastix::RegistrationBase< TElastix >::FixedMaskImagePointer = typename FixedMaskImageType::Pointer

protected

Definition at line 158 of file elxRegistrationBase.h.

FixedMaskImageType

template<class TElastix >

using elastix::RegistrationBase< TElastix >::FixedMaskImageType = typename ElastixType::FixedMaskType

protected

Definition at line 156 of file elxRegistrationBase.h.

FixedMaskSpatialObjectPointer

template<class TElastix >

using elastix::RegistrationBase< TElastix >::FixedMaskSpatialObjectPointer = typename FixedMaskSpatialObjectType::Pointer

protected

Definition at line 162 of file elxRegistrationBase.h.

FixedMaskSpatialObjectType

template<class TElastix >

using elastix::RegistrationBase< TElastix >::FixedMaskSpatialObjectType = itk::ImageMaskSpatialObject<Self::FixedImageDimension>

protected

Definition at line 160 of file elxRegistrationBase.h.

ITKBaseType

template<class TElastix >

using elastix::MultiMetricMultiResolutionRegistration< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 175 of file elxMultiMetricMultiResolutionRegistration.h.

MaskPixelType

template<class TElastix >

using elastix::RegistrationBase< TElastix >::MaskPixelType = typename ElastixType::MaskPixelType

protected

Typedef's for mask support.

Definition at line 155 of file elxRegistrationBase.h.

MovingMaskImagePointer

template<class TElastix >

using elastix::RegistrationBase< TElastix >::MovingMaskImagePointer = typename MovingMaskImageType::Pointer

protected

Definition at line 159 of file elxRegistrationBase.h.

MovingMaskImageType

template<class TElastix >

using elastix::RegistrationBase< TElastix >::MovingMaskImageType = typename ElastixType::MovingMaskType

protected

Definition at line 157 of file elxRegistrationBase.h.

MovingMaskSpatialObjectPointer

template<class TElastix >

using elastix::RegistrationBase< TElastix >::MovingMaskSpatialObjectPointer = typename MovingMaskSpatialObjectType::Pointer

protected

Definition at line 163 of file elxRegistrationBase.h.

MovingMaskSpatialObjectType

template<class TElastix >

using elastix::RegistrationBase< TElastix >::MovingMaskSpatialObjectType = itk::ImageMaskSpatialObject<Self::MovingImageDimension>

protected

Definition at line 161 of file elxRegistrationBase.h.

OptimizerPointer

template<class TElastix >

using itk::MultiMetricMultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >::OptimizerPointer = typename OptimizerType::Pointer

Definition at line 109 of file itkMultiMetricMultiResolutionImageRegistrationMethod.h.

Pointer

template<class TElastix >

using elastix::MultiMetricMultiResolutionRegistration< TElastix >::Pointer = itk::SmartPointer<Self>

Standard ITK: SmartPointers

Definition at line 113 of file elxMultiMetricMultiResolutionRegistration.h.

RegistrationType

template<class TElastix >

using elastix::MultiMetricMultiResolutionRegistration< TElastix >::RegistrationType = typename Superclass2::RegistrationType

Definition at line 174 of file elxMultiMetricMultiResolutionRegistration.h.

Self

template<class TElastix >

using elastix::MultiMetricMultiResolutionRegistration< TElastix >::Self = MultiMetricMultiResolutionRegistration

Standard ITK: Self

Definition at line 104 of file elxMultiMetricMultiResolutionRegistration.h.

Superclass1

template<class TElastix >

using elastix::MultiMetricMultiResolutionRegistration< TElastix >::Superclass1 = itk::MultiMetricMultiResolutionImageRegistrationMethod<typename RegistrationBase<TElastix>::FixedImageType, typename RegistrationBase<TElastix>::MovingImageType>

Standard ITK: Superclasses.

Definition at line 107 of file elxMultiMetricMultiResolutionRegistration.h.

Superclass2

template<class TElastix >

using elastix::MultiMetricMultiResolutionRegistration< TElastix >::Superclass2 = RegistrationBase<TElastix>

Definition at line 110 of file elxMultiMetricMultiResolutionRegistration.h.

UseMaskErosionArrayType

template<class TElastix >

using elastix::RegistrationBase< TElastix >::UseMaskErosionArrayType = std::vector<bool>

Typedef for mask erosion options

Definition at line 104 of file elxRegistrationBase.h.

Constructor & Destructor Documentation

MultiMetricMultiResolutionRegistration()

template<class TElastix >

elastix::MultiMetricMultiResolutionRegistration< TElastix >::MultiMetricMultiResolutionRegistration ( )

protected

The constructor.

~MultiMetricMultiResolutionRegistration()

template<class TElastix >

elastix::MultiMetricMultiResolutionRegistration< TElastix >::~MultiMetricMultiResolutionRegistration ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

AfterEachIteration()

template<class TElastix >

void elastix::MultiMetricMultiResolutionRegistration< TElastix >::AfterEachIteration ( )

overridevirtual

Execute stuff after each iteration

• Print the latest computed submetric values to screen.

Reimplemented from elastix::BaseComponent.

BeforeEachResolution()

template<class TElastix >

void elastix::MultiMetricMultiResolutionRegistration< TElastix >::BeforeEachResolution ( )

overridevirtual

Execute stuff before each resolution:

• Update masks with an erosion.
• Set the metric weights.

Reimplemented from elastix::BaseComponent.

BeforeRegistration()

template<class TElastix >

void elastix::MultiMetricMultiResolutionRegistration< TElastix >::BeforeRegistration ( )

overridevirtual

Execute stuff before the actual registration:

• Connect all components to the registration framework.
• Set the number of resolution levels.
• Set the fixed image regions.
• Add the sub metric columns to the iteration info object.

Reimplemented from elastix::BaseComponent.

elxClassNameMacro()

template<class TElastix >

elastix::MultiMetricMultiResolutionRegistration< TElastix >::elxClassNameMacro

(

"MultiMetricMultiResolutionRegistration< TElastix >"

)

Name of this class. Use this name in the parameter file to select this specific registration framework.
example: (Registration "MultiMetricMultiResolutionRegistration")

GetClassName()

template<class TElastix >

virtual const char * elastix::MultiMetricMultiResolutionRegistration< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::RegistrationBase< TElastix >.

ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >

elastix::MultiMetricMultiResolutionRegistration< TElastix >::ITK_DISALLOW_COPY_AND_MOVE

(

MultiMetricMultiResolutionRegistration< TElastix >

)

itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::MultiMetricMultiResolutionRegistration< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		Superclass2::FixedImageDimension
	)

Get the dimension of the fixed image.

itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::MultiMetricMultiResolutionRegistration< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		Superclass2::MovingImageDimension
	)

Get the dimension of the moving image.

New()

template<class TElastix >

static Pointer elastix::MultiMetricMultiResolutionRegistration< TElastix >::New ( )

static

Method for creation through the object factory.

SetComponents()

template<class TElastix >

virtual void elastix::MultiMetricMultiResolutionRegistration< TElastix >::SetComponents ( )

protectedvirtual

Read the components from m_Elastix and set them in the Registration class.

UpdateFixedMasks()

template<class TElastix >

void elastix::MultiMetricMultiResolutionRegistration< TElastix >::UpdateFixedMasks ( unsigned int  level )

protected

Function to update masks.

UpdateMovingMasks()

template<class TElastix >

void elastix::MultiMetricMultiResolutionRegistration< TElastix >::UpdateMovingMasks ( unsigned int  level )

protected

Field Documentation

elxOverrideGetSelfMacro

template<class TElastix >

elastix::MultiMetricMultiResolutionRegistration< TElastix >::elxOverrideGetSelfMacro

private

Definition at line 236 of file elxMultiMetricMultiResolutionRegistration.h.

m_ShowExactMetricValue

template<class TElastix >

bool elastix::MultiMetricMultiResolutionRegistration< TElastix >::m_ShowExactMetricValue

protected

Definition at line 233 of file elxMultiMetricMultiResolutionRegistration.h.