template<class TElastix>
class elastix::NormalizedGradientCorrelationMetric< TElastix >
An metric based on the itk::NormalizedGradientCorrelationImageToImageMetric.
Definition at line 37 of file elxNormalizedGradientCorrelationMetric.h.
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using | ConstPointer = itk::SmartPointer< const Self > |
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using | FixedImagePixelType = typename TFixedImage::PixelType |
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using | InterpolatorPointer = typename InterpolatorType::Pointer |
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using | ITKBaseType = typename Superclass2::ITKBaseType |
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using | Pointer = itk::SmartPointer< Self > |
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using | Self = NormalizedGradientCorrelationMetric |
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using | Superclass1 = itk::NormalizedGradientCorrelationImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType > |
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using | Superclass2 = MetricBase< TElastix > |
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using | CastFixedImageFilterPointer = typename CastFixedImageFilterType::Pointer |
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using | CastFixedImageFilterType = itk::CastImageFilter< FixedImageType, FixedGradientImageType > |
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using | CastMovedImageFilterPointer = typename CastMovedImageFilterType::Pointer |
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using | CastMovedImageFilterType = itk::CastImageFilter< TransformedMovingImageType, MovedGradientImageType > |
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using | CombinationTransformPointer = typename CombinationTransformType::Pointer |
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using | CombinationTransformType = typename itk::AdvancedCombinationTransform< ScalarType, FixedImageDimension > |
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using | ConstPointer = SmartPointer< const Self > |
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using | FixedGradientImageType = itk::Image< RealType, Self::FixedImageDimension > |
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using | FixedGradientPixelType = typename FixedGradientImageType::PixelType |
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using | FixedImagePixelType = typename TFixedImage::PixelType |
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using | InterpolatorPointer = typename InterpolatorType::Pointer |
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using | MaskImageType = itk::Image< unsigned char, Self::FixedImageDimension > |
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using | MaskImageTypePointer = typename MaskImageType::Pointer |
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using | MovedGradientImageType = itk::Image< RealType, Self::MovedImageDimension > |
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using | MovedGradientPixelType = typename MovedGradientImageType::PixelType |
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using | MovedImagePixelType = typename TMovingImage::PixelType |
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using | MovingImagePointer = typename MovingImageType::Pointer |
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using | MovingImageRegionType = typename MovingImageType::RegionType |
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using | Pointer = SmartPointer< Self > |
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using | RayCastInterpolatorPointer = typename RayCastInterpolatorType::Pointer |
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using | RayCastInterpolatorType = typename itk::AdvancedRayCastInterpolateImageFunction< MovingImageType, ScalarType > |
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using | ScalarType = typename TransformType::ScalarType |
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using | ScalesType = typename Optimizer::ScalesType |
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using | Self = NormalizedGradientCorrelationImageToImageMetric |
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using | Superclass = AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType > |
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using | TransformConstPointer = typename TransformType::ConstPointer |
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using | TransformedMovingImageType = itk::Image< FixedImagePixelType, Self::FixedImageDimension > |
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using | TransformMovingImageFilterPointer = typename TransformMovingImageFilterType::Pointer |
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using | TransformMovingImageFilterType = itk::ResampleImageFilter< MovingImageType, TransformedMovingImageType > |
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using | AdvancedTransformType = AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension > |
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using | BSplineOrder1TransformPointer = typename BSplineOrder1TransformType::Pointer |
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using | BSplineOrder1TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 > |
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using | BSplineOrder2TransformPointer = typename BSplineOrder2TransformType::Pointer |
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using | BSplineOrder2TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 > |
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using | BSplineOrder3TransformPointer = typename BSplineOrder3TransformType::Pointer |
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using | BSplineOrder3TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 > |
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using | CombinationTransformType = AdvancedCombinationTransform< ScalarType, FixedImageDimension > |
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using | ConstPointer = SmartPointer< const Self > |
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using | DerivativeValueType = typename DerivativeType::ValueType |
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using | FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType |
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using | FixedImageLimiterPointer = typename FixedImageLimiterType::Pointer |
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using | FixedImageLimiterType = LimiterFunctionBase< RealType, FixedImageDimension > |
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using | FixedImageMaskSpatialObject2Type = ImageMaskSpatialObject< Self::FixedImageDimension > |
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using | FixedImagePixelType = typename FixedImageType::PixelType |
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using | FixedImagePointer = typename FixedImageType::Pointer |
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using | HessianType = vnl_sparse_matrix< HessianValueType > |
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using | HessianValueType = typename DerivativeType::ValueType |
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using | ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer |
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using | ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType |
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using | ImageSamplerPointer = typename ImageSamplerType::Pointer |
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using | ImageSamplerType = ImageSamplerBase< FixedImageType > |
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using | MovingImageDerivativeScalesType = FixedArray< double, Self::MovingImageDimension > |
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using | MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType |
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using | MovingImageLimiterPointer = typename MovingImageLimiterType::Pointer |
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using | MovingImageLimiterType = LimiterFunctionBase< RealType, MovingImageDimension > |
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using | MovingImageMaskSpatialObject2Type = ImageMaskSpatialObject< Self::MovingImageDimension > |
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using | MovingImagePointer = typename MovingImageType::Pointer |
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using | MovingImageRegionType = typename MovingImageType::RegionType |
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using | NumberOfParametersType = typename AdvancedTransformType::NumberOfParametersType |
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using | Pointer = SmartPointer< Self > |
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using | ScalarType = typename TransformType::ScalarType |
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using | Self = AdvancedImageToImageMetric |
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using | Superclass = ImageToImageMetric< TFixedImage, TMovingImage > |
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using | ThreaderType = itk::PlatformMultiThreader |
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using | ThreadInfoType = typename ThreaderType::WorkUnitInfo |
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using | AdvancedMetricType = itk::AdvancedImageToImageMetric< FixedImageType, MovingImageType > |
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using | CoordinateRepresentationType = typename ITKBaseType::ParametersValueType |
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using | ElastixType = TElastix |
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using | FixedImageType = typename ElastixType::FixedImageType |
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using | FixedPointSetType = itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > |
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using | FixedPointType = typename FixedImageType::PointType |
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using | FixedPointValueType = typename FixedPointType::ValueType |
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using | ImageSamplerBaseType = typename AdvancedMetricType::ImageSamplerType |
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using | ITKBaseType = itk::SingleValuedCostFunction |
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using | MeasureType = typename ITKBaseType::MeasureType |
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using | MovingImageDerivativeScalesType = typename AdvancedMetricType::MovingImageDerivativeScalesType |
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using | MovingImageType = typename ElastixType::MovingImageType |
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using | MovingPointSetType = itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > |
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using | MovingPointType = typename MovingImageType::PointType |
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using | MovingPointValueType = typename MovingPointType::ValueType |
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using | RegistrationType = typename ElastixType::RegistrationBaseType |
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using | Self = MetricBase |
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using | Superclass = BaseComponentSE< TElastix > |
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using | ConfigurationPointer = Configuration::Pointer |
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using | ElastixType = TElastix |
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using | RegistrationType = typename ElastixType::RegistrationBaseType |
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using | Self = BaseComponentSE |
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using | Superclass = BaseComponent |
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void | BeforeEachResolution () override |
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void | BeforeRegistration () override |
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| elxClassNameMacro ("NormalizedGradientCorrelation") |
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virtual const char * | GetClassName () const |
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void | Initialize () override |
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| ITK_DISALLOW_COPY_AND_MOVE (NormalizedGradientCorrelationMetric) |
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| itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension) |
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| itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension) |
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virtual const char * | GetClassName () const |
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void | GetDerivative (const TransformParametersType ¶meters, DerivativeType &derivative) const override |
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virtual const double & | GetDerivativeDelta () |
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virtual const ScalesType & | GetScales () |
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MeasureType | GetValue (const TransformParametersType ¶meters) const override |
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void | GetValueAndDerivative (const TransformParametersType ¶meters, MeasureType &Value, DerivativeType &derivative) const override |
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void | Initialize () override |
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| ITK_DISALLOW_COPY_AND_MOVE (NormalizedGradientCorrelationImageToImageMetric) |
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| itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension) |
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| itkStaticConstMacro (MovedImageDimension, unsigned int, MovingImageType::ImageDimension) |
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virtual void | SetDerivativeDelta (double _arg) |
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virtual void | SetScales (ScalesType _arg) |
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void | SetTransformParameters (const TransformParametersType ¶meters) const |
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void | WriteGradientImagesToFiles () const |
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virtual void | BeforeThreadedGetValueAndDerivative (const TransformParametersType ¶meters) const |
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virtual const char * | GetClassName () const |
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virtual const FixedImageLimiterType * | GetFixedImageLimiter () |
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virtual double | GetFixedLimitRangeRatio () const |
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virtual ImageSamplerType * | GetImageSampler () const |
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virtual const MovingImageDerivativeScalesType & | GetMovingImageDerivativeScales () |
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virtual const MovingImageLimiterType * | GetMovingImageLimiter () |
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virtual double | GetMovingLimitRangeRatio () const |
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virtual double | GetRequiredRatioOfValidSamples () const |
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virtual bool | GetScaleGradientWithRespectToMovingImageOrientation () const |
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virtual void | GetSelfHessian (const TransformParametersType ¶meters, HessianType &H) const |
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const AdvancedTransformType * | GetTransform () const override |
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virtual bool | GetUseFixedImageLimiter () const |
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virtual bool | GetUseImageSampler () const |
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virtual const bool & | GetUseMetricSingleThreaded () |
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virtual bool | GetUseMovingImageDerivativeScales () const |
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virtual bool | GetUseMovingImageLimiter () const |
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virtual const bool & | GetUseMultiThread () |
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void | Initialize () override |
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| ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric) |
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| itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension) |
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| itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension) |
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virtual void | SetFixedImageLimiter (FixedImageLimiterType *_arg) |
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virtual void | SetFixedLimitRangeRatio (double _arg) |
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virtual void | SetImageSampler (ImageSamplerType *_arg) |
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virtual void | SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg) |
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virtual void | SetMovingImageLimiter (MovingImageLimiterType *_arg) |
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virtual void | SetMovingLimitRangeRatio (double _arg) |
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virtual void | SetNumberOfWorkUnits (ThreadIdType numberOfThreads) |
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virtual void | SetRequiredRatioOfValidSamples (double _arg) |
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virtual void | SetScaleGradientWithRespectToMovingImageOrientation (bool _arg) |
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virtual void | SetTransform (AdvancedTransformType *arg) |
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virtual void | SetUseMetricSingleThreaded (bool _arg) |
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virtual void | SetUseMovingImageDerivativeScales (bool _arg) |
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virtual void | SetUseMultiThread (bool _arg) |
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virtual void | UseMetricSingleThreadedOff () |
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virtual void | UseMetricSingleThreadedOn () |
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virtual void | UseMultiThreadOff () |
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virtual void | UseMultiThreadOn () |
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void | AfterEachIterationBase () override |
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void | BeforeEachResolutionBase () override |
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virtual ImageSamplerBaseType * | GetAdvancedMetricImageSampler () const |
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virtual bool | GetAdvancedMetricUseImageSampler () const |
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ITKBaseType * | GetAsITKBaseType () |
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const ITKBaseType * | GetAsITKBaseType () const |
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virtual const char * | GetClassName () const |
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virtual MeasureType | GetCurrentExactMetricValue () const |
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virtual bool | GetShowExactMetricValue () const |
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| ITK_DISALLOW_COPY_AND_MOVE (MetricBase) |
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| itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension) |
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| itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension) |
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virtual void | SelectNewSamples () |
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virtual void | SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler) |
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void | AddTargetCellToIterationInfo (const char *const name) |
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Configuration * | GetConfiguration () const |
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ElastixType * | GetElastix () const |
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xl::xoutbase & | GetIterationInfoAt (const char *const name) |
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RegistrationType * | GetRegistration () const |
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| ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE) |
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int | RemoveTargetCellFromIterationInfo (const char *const name) |
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void | SetConfiguration (Configuration *_arg) |
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void | SetElastix (ElastixType *_arg) |
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virtual void | AfterEachIteration () |
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virtual void | AfterEachIterationBase () |
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virtual void | AfterEachResolution () |
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virtual void | AfterEachResolutionBase () |
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virtual void | AfterRegistration () |
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virtual void | AfterRegistrationBase () |
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virtual int | BeforeAll () |
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virtual int | BeforeAllBase () |
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virtual void | BeforeEachResolution () |
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virtual void | BeforeEachResolutionBase () |
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virtual void | BeforeRegistration () |
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virtual void | BeforeRegistrationBase () |
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virtual const char * | elxGetClassName () const |
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const char * | GetComponentLabel () const |
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| ITK_DISALLOW_COPY_AND_MOVE (BaseComponent) |
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| itkTypeMacroNoParent (BaseComponent) |
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void | SetComponentLabel (const char *label, unsigned int idx) |
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| NormalizedGradientCorrelationMetric ()=default |
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| ~NormalizedGradientCorrelationMetric () override=default |
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void | ComputeMeanFixedGradient () const |
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void | ComputeMeanMovedGradient () const |
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MeasureType | ComputeMeasure (const TransformParametersType ¶meters) const |
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| NormalizedGradientCorrelationImageToImageMetric () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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| ~NormalizedGradientCorrelationImageToImageMetric () override=default |
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| AdvancedImageToImageMetric () |
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virtual void | AfterThreadedGetValue (MeasureType &value) const |
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virtual void | AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const |
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virtual void | CheckForAdvancedTransform () |
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virtual void | CheckForBSplineInterpolator () |
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virtual void | CheckForBSplineTransform () const |
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virtual void | CheckNumberOfSamples (unsigned long wanted, unsigned long found) const |
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virtual bool | EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const |
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virtual bool | EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const |
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virtual void | EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const |
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bool | FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const |
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virtual void | InitializeImageSampler () |
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virtual void | InitializeLimiters () |
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virtual void | InitializeThreadingParameters () const |
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virtual bool | IsInsideMovingMask (const MovingImagePointType &point) const |
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| itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct) |
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| itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct) |
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| itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct) |
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| itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct) |
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void | LaunchGetValueAndDerivativeThreaderCallback () const |
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void | LaunchGetValueThreaderCallback () const |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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virtual void | SetUseFixedImageLimiter (bool _arg) |
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virtual void | SetUseImageSampler (bool _arg) |
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virtual void | SetUseMovingImageLimiter (bool _arg) |
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virtual void | ThreadedGetValue (ThreadIdType threadID) |
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virtual void | ThreadedGetValueAndDerivative (ThreadIdType threadID) |
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MovingImagePointType | TransformPoint (const FixedImagePointType &fixedImagePoint) const |
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| ~AdvancedImageToImageMetric () override=default |
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virtual MeasureType | GetExactValue (const ParametersType ¶meters) |
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| MetricBase ()=default |
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| ~MetricBase () override=default |
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| BaseComponentSE ()=default |
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| ~BaseComponentSE () override=default |
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| BaseComponent ()=default |
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virtual | ~BaseComponent ()=default |
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using | FixedSobelFilter = NeighborhoodOperatorImageFilter< FixedGradientImageType, FixedGradientImageType > |
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using | MovedSobelFilter = NeighborhoodOperatorImageFilter< MovedGradientImageType, MovedGradientImageType > |
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using | BSplineInterpolatorFloatPointer = typename BSplineInterpolatorFloatType::Pointer |
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using | BSplineInterpolatorFloatType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float > |
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using | BSplineInterpolatorPointer = typename BSplineInterpolatorType::Pointer |
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using | BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double > |
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using | CentralDifferenceGradientFilterPointer = typename CentralDifferenceGradientFilterType::Pointer |
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using | CentralDifferenceGradientFilterType = GradientImageFilter< MovingImageType, RealType, RealType > |
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using | FixedImageIndexType = typename FixedImageType::IndexType |
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using | FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType |
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using | FixedImagePointType = typename TransformType::InputPointType |
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using | LinearInterpolatorPointer = typename LinearInterpolatorType::Pointer |
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using | LinearInterpolatorType = AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType > |
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using | MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType |
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using | MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType |
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using | MovingImageIndexType = typename MovingImageType::IndexType |
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using | MovingImagePointType = typename TransformType::OutputPointType |
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using | NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType |
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using | ReducedBSplineInterpolatorPointer = typename ReducedBSplineInterpolatorType::Pointer |
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using | ReducedBSplineInterpolatorType = ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double > |
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using | ExactMetricImageSamplerPointer = typename ExactMetricImageSamplerType::Pointer |
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using | ExactMetricImageSamplerType = itk::ImageGridSampler< FixedImageType > |
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using | ExactMetricSampleGridSpacingType = typename ExactMetricImageSamplerType::SampleGridSpacingType |
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using | ParametersType = typename ITKBaseType::ParametersType |
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static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION | AccumulateDerivativesThreaderCallback (void *arg) |
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static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION | GetValueAndDerivativeThreaderCallback (void *arg) |
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static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION | GetValueThreaderCallback (void *arg) |
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AdvancedTransformType::Pointer | m_AdvancedTransform { nullptr } |
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BSplineInterpolatorPointer | m_BSplineInterpolator { nullptr } |
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BSplineInterpolatorFloatPointer | m_BSplineInterpolatorFloat { nullptr } |
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CentralDifferenceGradientFilterPointer | m_CentralDifferenceGradientFilter { nullptr } |
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FixedImageLimiterPointer | m_FixedImageLimiter { nullptr } |
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FixedImageLimiterOutputType | m_FixedImageMaxLimit { 1 } |
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FixedImageLimiterOutputType | m_FixedImageMinLimit { 0 } |
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FixedImagePixelType | m_FixedImageTrueMax { 1 } |
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FixedImagePixelType | m_FixedImageTrueMin { 0 } |
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double | m_FixedLimitRangeRatio { 0.01 } |
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std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]> | m_GetValueAndDerivativePerThreadVariables |
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ThreadIdType | m_GetValueAndDerivativePerThreadVariablesSize { 0 } |
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std::unique_ptr< AlignedGetValuePerThreadStruct[]> | m_GetValuePerThreadVariables { nullptr } |
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ThreadIdType | m_GetValuePerThreadVariablesSize { 0 } |
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ImageSamplerPointer | m_ImageSampler { nullptr } |
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bool | m_InterpolatorIsBSpline { false } |
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bool | m_InterpolatorIsBSplineFloat { false } |
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bool | m_InterpolatorIsLinear { false } |
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bool | m_InterpolatorIsReducedBSpline { false } |
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LinearInterpolatorPointer | m_LinearInterpolator { nullptr } |
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MovingImageLimiterPointer | m_MovingImageLimiter { nullptr } |
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MovingImageLimiterOutputType | m_MovingImageMaxLimit { 1 } |
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MovingImageLimiterOutputType | m_MovingImageMinLimit { 0 } |
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MovingImagePixelType | m_MovingImageTrueMax { 1 } |
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MovingImagePixelType | m_MovingImageTrueMin { 0 } |
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double | m_MovingLimitRangeRatio { 0.01 } |
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ReducedBSplineInterpolatorPointer | m_ReducedBSplineInterpolator { nullptr } |
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MultiThreaderParameterType | m_ThreaderMetricParameters |
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bool | m_TransformIsAdvanced { false } |
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bool | m_TransformIsBSpline { false } |
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bool | m_UseMetricSingleThreaded { true } |
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bool | m_UseMultiThread { false } |
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bool | m_UseOpenMP |
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MeasureType | m_CurrentExactMetricValue { 0.0 } |
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unsigned int | m_ExactMetricEachXNumberOfIterations { 1 } |
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ExactMetricSampleGridSpacingType | m_ExactMetricSampleGridSpacing |
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ExactMetricImageSamplerPointer | m_ExactMetricSampler { nullptr } |
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bool | m_ShowExactMetricValue { false } |
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ConfigurationPointer | m_Configuration {} |
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itk::WeakPointer< TElastix > | m_Elastix {} |
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RegistrationType * | m_Registration {} |
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