#include <elxStatisticalShapePenalty.h>

Detailed Description

template<class TElastix>
class elastix::StatisticalShapePenalty< TElastix >

An metric based on the itk::StatisticalShapePointPenalty.

The parameters used in this class are:

Metric: Select this metric as follows:
(Metric "StatisticalShapePenalty")

ShrinkageIntensity: The mixing ratio ($\beta$) of the provided covariance matrix and an identity matrix. $\Sigma' = (1-\beta)\Sigma + \beta \sigma_0^2 I$ Can be defined for each resolution
example: (ShrinkageIntensity 0.2)

BaseVariance: The width ($\sigma_0^2$) of the non-informative prior. Can be defined for each resolution
example: (BaseVariance 1000.0)

Author: F.F. Berendsen, Image Sciences Institute, UMC Utrecht, The Netherlands

Note: This work was funded by the projects Care4Me and Mediate.; If you use the StatisticalShapePenalty anywhere we would appreciate if you cite the following article:
F.F. Berendsen et al., Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR, Comput. Vis. Image Understand. (2013), http://dx.doi.org/10.1016/j.cviu.2012.12.006

Definition at line 58 of file elxStatisticalShapePenalty.h.

Inheritance diagram for elastix::StatisticalShapePenalty< TElastix >:

[legend]

Public Types
using	CombinationTransformType = itk::AdvancedCombinationTransform< CoordRepType, Self::FixedImageDimension >

using	ConstPointer = SmartPointer< const Self >

using	CoordRepType = typename OutputPointType::CoordRepType

using	FixedImageType = typename ElastixType::FixedImageType

using	ImageType = FixedImageType

using	InitialTransformType = typename CombinationTransformType::InitialTransformType

using	ITKBaseType = typename Superclass2::ITKBaseType

using	MovingImageType = typename ElastixType::MovingImageType

using	Pointer = SmartPointer< Self >

using	PointSetType = FixedPointSetType

using	Self = StatisticalShapePenalty

using	Superclass1 = StatisticalShapePointPenalty< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetType >

using	Superclass2 = MetricBase< TElastix >

using	VnlVectorType = vnl_vector< CoordRepType >

Public Types inherited from itk::StatisticalShapePointPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
using	ConstPointer = SmartPointer< const Self >

using	CoordRepType = typename OutputPointType::CoordRepType

using	DerivativeValueType = typename DerivativeType::ValueType

using	FixedPointSetConstPointer = typename FixedPointSetType::ConstPointer

using	FixedPointSetType = MetricBase< TElastix >::FixedPointSetType

using	InputPointType = typename TransformType::InputPointType

using	MovingPointSetConstPointer = typename MovingPointSetType::ConstPointer

using	MovingPointSetType = MetricBase< TElastix >::MovingPointSetType

using	NonZeroJacobianIndicesType = typename TransformType::NonZeroJacobianIndicesType

using	OutputPointType = typename TransformType::OutputPointType

using	PCACovarianceType = vnl_svd_economy< CoordRepType >

using	PointDataIterator = typename FixedPointSetType::PointDataContainer::ConstIterator

using	Pointer = SmartPointer< Self >

using	PointIterator = typename FixedPointSetType::PointsContainer::ConstIterator

using	ProposalDerivativeType = typename std::vector< VnlVectorType * >

using	Self = StatisticalShapePointPenalty

using	Superclass = SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >

using	TransformJacobianType = typename TransformType::JacobianType

using	TransformParametersType = typename TransformType::ParametersType

using	TransformPointer = typename TransformType::Pointer

using	TransformType = AdvancedTransform< CoordinateRepresentationType, Self::FixedPointSetDimension, Self::MovingPointSetDimension >

using	VnlMatrixType = vnl_matrix< CoordRepType >

using	VnlVectorType = vnl_vector< CoordRepType >

Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
using	ConstPointer = SmartPointer< const Self >

using	CoordinateRepresentationType = Superclass::ParametersValueType

using	DerivativeValueType = typename DerivativeType::ValueType

using	FixedImageMaskConstPointer = typename FixedImageMaskType::ConstPointer

using	FixedImageMaskPointer = typename FixedImageMaskType::Pointer

using	FixedImageMaskType = SpatialObject< Self::FixedPointSetDimension >

using	FixedPointSetConstPointer = typename FixedPointSetType::ConstPointer

using	FixedPointSetPixelType = typename FixedPointSetType::PixelType

using	FixedPointSetType = TFixedPointSet

using	InputPointType = typename TransformType::InputPointType

using	MovingImageMaskConstPointer = typename MovingImageMaskType::ConstPointer

using	MovingImageMaskPointer = typename MovingImageMaskType::Pointer

using	MovingImageMaskType = SpatialObject< Self::MovingPointSetDimension >

using	MovingPointSetConstPointer = typename MovingPointSetType::ConstPointer

using	MovingPointSetPixelType = typename MovingPointSetType::PixelType

using	MovingPointSetType = TMovingPointSet

using	NonZeroJacobianIndicesType = typename TransformType::NonZeroJacobianIndicesType

using	OutputPointType = typename TransformType::OutputPointType

using	PointDataIterator = typename FixedPointSetType::PointDataContainer::ConstIterator

using	Pointer = SmartPointer< Self >

using	PointIterator = typename FixedPointSetType::PointsContainer::ConstIterator

using	Self = SingleValuedPointSetToPointSetMetric

using	Superclass = SingleValuedCostFunction

using	TransformJacobianType = typename TransformType::JacobianType

using	TransformParametersType = typename TransformType::ParametersType

using	TransformPointer = typename TransformType::Pointer

using	TransformType = AdvancedTransform< CoordinateRepresentationType, Self::FixedPointSetDimension, Self::MovingPointSetDimension >

Public Types inherited from elastix::MetricBase< TElastix >
using	AdvancedMetricType = itk::AdvancedImageToImageMetric< FixedImageType, MovingImageType >

using	CoordinateRepresentationType = typename ITKBaseType::ParametersValueType

using	ElastixType = TElastix

using	FixedImageType = typename ElastixType::FixedImageType

using	FixedPointSetType = itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >

using	FixedPointType = typename FixedImageType::PointType

using	FixedPointValueType = typename FixedPointType::ValueType

using	ImageSamplerBaseType = typename AdvancedMetricType::ImageSamplerType

using	ITKBaseType = itk::SingleValuedCostFunction

using	MeasureType = typename ITKBaseType::MeasureType

using	MovingImageDerivativeScalesType = typename AdvancedMetricType::MovingImageDerivativeScalesType

using	MovingImageType = typename ElastixType::MovingImageType

using	MovingPointSetType = itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >

using	MovingPointType = typename MovingImageType::PointType

using	MovingPointValueType = typename MovingPointType::ValueType

using	RegistrationType = typename ElastixType::RegistrationBaseType

using	Self = MetricBase

using	Superclass = BaseComponentSE< TElastix >

Public Types inherited from elastix::BaseComponentSE< TElastix >
using	ConfigurationPointer = Configuration::Pointer

using	ElastixType = TElastix

using	RegistrationType = typename ElastixType::RegistrationBaseType

using	Self = BaseComponentSE

using	Superclass = BaseComponent

Public Member Functions
void	BeforeEachResolution () override

void	BeforeRegistration () override

	elxClassNameMacro ("StatisticalShapePenalty")

virtual const char *	GetClassName () const

void	Initialize () override

	ITK_DISALLOW_COPY_AND_MOVE (StatisticalShapePenalty)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

unsigned int	ReadLandmarks (const std::string &landmarkFileName, typename PointSetType::Pointer &pointSet, const typename ImageType::ConstPointer image)

unsigned int	ReadShape (const std::string &ShapeFileName, typename PointSetType::Pointer &pointSet, const typename ImageType::ConstPointer image)

void	SelectNewSamples () override

Public Member Functions inherited from itk::StatisticalShapePointPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
virtual void	BaseVarianceNeedsUpdateOff ()

virtual void	BaseVarianceNeedsUpdateOn ()

virtual MeasureType	GetBaseVariance () const

virtual MeasureType	GetCentroidXVariance () const

virtual MeasureType	GetCentroidYVariance () const

virtual MeasureType	GetCentroidZVariance () const

virtual const char *	GetClassName () const

virtual MeasureType	GetCutOffSharpness () const

virtual MeasureType	GetCutOffValue () const

void	GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const override

virtual const bool &	GetNormalizedShapeModel ()

virtual const int &	GetShapeModelCalculation ()

virtual MeasureType	GetShrinkageIntensity () const

virtual MeasureType	GetSizeVariance () const

MeasureType	GetValue (const TransformParametersType &parameters) const override

void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override

void	Initialize () override

	ITK_DISALLOW_COPY_AND_MOVE (StatisticalShapePointPenalty)

virtual void	NormalizedShapeModelOff ()

virtual void	NormalizedShapeModelOn ()

virtual void	SetBaseVariance (MeasureType _arg)

virtual void	SetBaseVarianceNeedsUpdate (bool _arg)

virtual void	SetCentroidXVariance (MeasureType _arg)

virtual void	SetCentroidYVariance (MeasureType _arg)

virtual void	SetCentroidZVariance (MeasureType _arg)

virtual void	SetCovarianceMatrix (const vnl_matrix< double > *_arg)

virtual void	SetCutOffSharpness (MeasureType _arg)

virtual void	SetCutOffValue (MeasureType _arg)

virtual void	SetEigenValues (const vnl_vector< double > *_arg)

virtual void	SetEigenVectors (const vnl_matrix< double > *_arg)

virtual void	SetMeanVector (const vnl_vector< double > *_arg)

virtual void	SetNormalizedShapeModel (bool _arg)

virtual void	SetShapeModelCalculation (int _arg)

virtual void	SetShrinkageIntensity (MeasureType _arg)

virtual void	SetShrinkageIntensityNeedsUpdate (bool _arg)

virtual void	SetSizeVariance (MeasureType _arg)

virtual void	SetVariancesNeedsUpdate (bool _arg)

virtual void	ShrinkageIntensityNeedsUpdateOff ()

virtual void	ShrinkageIntensityNeedsUpdateOn ()

virtual void	VariancesNeedsUpdateOff ()

virtual void	VariancesNeedsUpdateOn ()

Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const

virtual const char *	GetClassName () const

virtual const FixedImageMaskType *	GetFixedImageMask ()

virtual const FixedPointSetType *	GetFixedPointSet ()

virtual const MovingImageMaskType *	GetMovingImageMask ()

virtual const MovingPointSetType *	GetMovingPointSet ()

unsigned int	GetNumberOfParameters () const override

virtual const TransformType *	GetTransform ()

virtual const bool &	GetUseMetricSingleThreaded ()

virtual void	Initialize ()

	ITK_DISALLOW_COPY_AND_MOVE (SingleValuedPointSetToPointSetMetric)

	itkStaticConstMacro (FixedPointSetDimension, unsigned int, TFixedPointSet::PointDimension)

	itkStaticConstMacro (MovingPointSetDimension, unsigned int, TMovingPointSet::PointDimension)

virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)

virtual void	SetFixedPointSet (const FixedPointSetType *_arg)

virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)

virtual void	SetMovingPointSet (const MovingPointSetType *_arg)

virtual void	SetTransform (TransformType *_arg)

void	SetTransformParameters (const ParametersType &parameters) const

virtual void	SetUseMetricSingleThreaded (bool _arg)

virtual void	UseMetricSingleThreadedOff ()

virtual void	UseMetricSingleThreadedOn ()

Public Member Functions inherited from elastix::MetricBase< TElastix >
void	AfterEachIterationBase () override

void	BeforeEachResolutionBase () override

virtual ImageSamplerBaseType *	GetAdvancedMetricImageSampler () const

virtual bool	GetAdvancedMetricUseImageSampler () const

ITKBaseType *	GetAsITKBaseType ()

const ITKBaseType *	GetAsITKBaseType () const

virtual const char *	GetClassName () const

virtual MeasureType	GetCurrentExactMetricValue () const

virtual bool	GetShowExactMetricValue () const

	ITK_DISALLOW_COPY_AND_MOVE (MetricBase)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SelectNewSamples ()

virtual void	SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void	AddTargetCellToIterationInfo (const char *const name)

Configuration *	GetConfiguration () const

ElastixType *	GetElastix () const

xl::xoutbase &	GetIterationInfoAt (const char *const name)

RegistrationType *	GetRegistration () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)

int	RemoveTargetCellFromIterationInfo (const char *const name)

void	SetConfiguration (Configuration *_arg)

void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration ()

virtual void	AfterEachIterationBase ()

virtual void	AfterEachResolution ()

virtual void	AfterEachResolutionBase ()

virtual void	AfterRegistration ()

virtual void	AfterRegistrationBase ()

virtual int	BeforeAll ()

virtual int	BeforeAllBase ()

virtual void	BeforeEachResolution ()

virtual void	BeforeEachResolutionBase ()

virtual void	BeforeRegistration ()

virtual void	BeforeRegistrationBase ()

virtual const char *	elxGetClassName () const

const char *	GetComponentLabel () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)

	itkTypeMacroNoParent (BaseComponent)

void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::StatisticalShapePointPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
static Pointer	New ()

Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto	AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())

static void	InitializeElastixExecutable ()

static bool	IsElastixLibrary ()

Protected Member Functions
	StatisticalShapePenalty ()=default

	~StatisticalShapePenalty () override=default

Protected Member Functions inherited from itk::StatisticalShapePointPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
void	PrintSelf (std::ostream &os, Indent indent) const override

	StatisticalShapePointPenalty ()

	~StatisticalShapePointPenalty () override

Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
void	PrintSelf (std::ostream &os, Indent indent) const override

	SingleValuedPointSetToPointSetMetric ()=default

	~SingleValuedPointSetToPointSetMetric () override=default

Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType	GetExactValue (const ParametersType &parameters)

	MetricBase ()=default

	~MetricBase () override=default

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default

	~BaseComponentSE () override=default

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default

virtual	~BaseComponent ()=default

Private Attributes
	elxOverrideGetSelfMacro

Additional Inherited Members
Protected Types inherited from elastix::MetricBase< TElastix >
using	ExactMetricImageSamplerPointer = typename ExactMetricImageSamplerType::Pointer

using	ExactMetricImageSamplerType = itk::ImageGridSampler< FixedImageType >

using	ExactMetricSampleGridSpacingType = typename ExactMetricImageSamplerType::SampleGridSpacingType

using	ParametersType = typename ITKBaseType::ParametersType

Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
FixedImageMaskConstPointer	m_FixedImageMask { nullptr }

FixedPointSetConstPointer	m_FixedPointSet { nullptr }

MovingImageMaskConstPointer	m_MovingImageMask { nullptr }

MovingPointSetConstPointer	m_MovingPointSet { nullptr }

unsigned int	m_NumberOfPointsCounted { 0 }

TransformPointer	m_Transform { nullptr }

bool	m_UseMetricSingleThreaded { true }

Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType	m_CurrentExactMetricValue { 0.0 }

unsigned int	m_ExactMetricEachXNumberOfIterations { 1 }

ExactMetricSampleGridSpacingType	m_ExactMetricSampleGridSpacing

ExactMetricImageSamplerPointer	m_ExactMetricSampler { nullptr }

bool	m_ShowExactMetricValue { false }

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}

itk::WeakPointer< TElastix >	m_Elastix {}

RegistrationType *	m_Registration {}

Member Typedef Documentation

◆ CombinationTransformType

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::CombinationTransformType = itk::AdvancedCombinationTransform<CoordRepType, Self::FixedImageDimension>

Other typedef's.

Definition at line 118 of file elxStatisticalShapePenalty.h.

◆ ConstPointer

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::ConstPointer = SmartPointer<const Self>

Definition at line 72 of file elxStatisticalShapePenalty.h.

◆ CoordRepType

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::CoordRepType = typename OutputPointType::CoordRepType

Definition at line 109 of file elxStatisticalShapePenalty.h.

◆ FixedImageType

template<class TElastix >

using elastix::MetricBase< TElastix >::FixedImageType = typename ElastixType::FixedImageType

Other typedef's.

Definition at line 89 of file elxMetricBase.h.

◆ ImageType

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::ImageType = FixedImageType

Definition at line 138 of file elxStatisticalShapePenalty.h.

◆ InitialTransformType

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::InitialTransformType = typename CombinationTransformType::InitialTransformType

Definition at line 119 of file elxStatisticalShapePenalty.h.

◆ ITKBaseType

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 124 of file elxStatisticalShapePenalty.h.

◆ MovingImageType

template<class TElastix >

using elastix::MetricBase< TElastix >::MovingImageType = typename ElastixType::MovingImageType

Definition at line 92 of file elxMetricBase.h.

◆ Pointer

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::Pointer = SmartPointer<Self>

Definition at line 71 of file elxStatisticalShapePenalty.h.

◆ PointSetType

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::PointSetType = FixedPointSetType

Assuming fixed and moving pointsets are of equal type, which implicitly assumes that the fixed and moving image are of the same type.

Definition at line 137 of file elxStatisticalShapePenalty.h.

◆ Self

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::Self = StatisticalShapePenalty

Standard ITK-stuff.

Definition at line 67 of file elxStatisticalShapePenalty.h.

◆ Superclass1

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::Superclass1 = StatisticalShapePointPenalty<typename MetricBase<TElastix>::FixedPointSetType, typename MetricBase<TElastix>::MovingPointSetType>

Definition at line 68 of file elxStatisticalShapePenalty.h.

◆ Superclass2

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::Superclass2 = MetricBase<TElastix>

Definition at line 70 of file elxStatisticalShapePenalty.h.

◆ VnlVectorType

template<class TElastix >

using elastix::StatisticalShapePenalty< TElastix >::VnlVectorType = vnl_vector<CoordRepType>

Definition at line 110 of file elxStatisticalShapePenalty.h.

Constructor & Destructor Documentation

◆ StatisticalShapePenalty()

template<class TElastix >

elastix::StatisticalShapePenalty< TElastix >::StatisticalShapePenalty ( )

protecteddefault

The constructor.

◆ ~StatisticalShapePenalty()

template<class TElastix >

elastix::StatisticalShapePenalty< TElastix >::~StatisticalShapePenalty ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

◆ BeforeEachResolution()

template<class TElastix >

void elastix::StatisticalShapePenalty< TElastix >::BeforeEachResolution ( )

overridevirtual

Reimplemented from elastix::BaseComponent.

◆ BeforeRegistration()

template<class TElastix >

void elastix::StatisticalShapePenalty< TElastix >::BeforeRegistration ( )

overridevirtual

Do some things before registration:

Load and set the pointsets.

Reimplemented from elastix::BaseComponent.

◆ elxClassNameMacro()

template<class TElastix >

elastix::StatisticalShapePenalty< TElastix >::elxClassNameMacro ( "StatisticalShapePenalty< TElastix >" )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "StatisticalShapePenalty")

◆ GetClassName()

template<class TElastix >

virtual const char * elastix::StatisticalShapePenalty< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

◆ Initialize()

template<class TElastix >

void elastix::StatisticalShapePenalty< TElastix >::Initialize ( )

overridevirtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >

elastix::StatisticalShapePenalty< TElastix >::ITK_DISALLOW_COPY_AND_MOVE ( StatisticalShapePenalty< TElastix > )

◆ itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::StatisticalShapePenalty< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

◆ itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::StatisticalShapePenalty< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

The moving image dimension.

◆ New()

template<class TElastix >

static Pointer elastix::StatisticalShapePenalty< TElastix >::New ( )

static

Method for creation through the object factory.

◆ ReadLandmarks()

template<class TElastix >

unsigned int elastix::StatisticalShapePenalty< TElastix >::ReadLandmarks	(	const std::string &	landmarkFileName,
		typename PointSetType::Pointer &	pointSet,
		const typename ImageType::ConstPointer	image
	)

Function to read the corresponding points.

◆ ReadShape()

template<class TElastix >

unsigned int elastix::StatisticalShapePenalty< TElastix >::ReadShape	(	const std::string &	ShapeFileName,
		typename PointSetType::Pointer &	pointSet,
		const typename ImageType::ConstPointer	image
	)

◆ SelectNewSamples()

template<class TElastix >

void elastix::StatisticalShapePenalty< TElastix >::SelectNewSamples ( )

inlineoverridevirtual

Overwrite to silence warning.

Reimplemented from elastix::MetricBase< TElastix >.

Definition at line 169 of file elxStatisticalShapePenalty.h.

Field Documentation

◆ elxOverrideGetSelfMacro

template<class TElastix >

elastix::StatisticalShapePenalty< TElastix >::elxOverrideGetSelfMacro

private

Definition at line 179 of file elxStatisticalShapePenalty.h.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ CombinationTransformType

◆ ConstPointer

◆ CoordRepType

◆ FixedImageType

◆ ImageType

◆ InitialTransformType

◆ ITKBaseType

◆ MovingImageType

◆ Pointer

◆ PointSetType

◆ Self

◆ Superclass1

◆ Superclass2

◆ VnlVectorType

Constructor & Destructor Documentation

◆ StatisticalShapePenalty()

◆ ~StatisticalShapePenalty()

Member Function Documentation

◆ BeforeEachResolution()

◆ BeforeRegistration()

◆ elxClassNameMacro()

◆ GetClassName()

◆ Initialize()

◆ ITK_DISALLOW_COPY_AND_MOVE()

◆ itkStaticConstMacro() [1/2]

◆ itkStaticConstMacro() [2/2]

◆ New()

◆ ReadLandmarks()

◆ ReadShape()

◆ SelectNewSamples()

Field Documentation

◆ elxOverrideGetSelfMacro