#include <elxTransformixMain.h>

Detailed Description

A class with all functionality to configure transformix.

The TransformixMain class inherits from ElastixMain. We overwrite the Run() -function. In the new Run() the Run()-function from the ElastixTemplate-class is not called (as in elxElastixMain.cxx), because this time we don't want to start a registration, but just apply a transformation to an input image.

Definition at line 39 of file elxTransformixMain.h.

Inheritance diagram for elastix::TransformixMain:

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Public Types
using	ArgumentMapType = Configuration::CommandLineArgumentMapType

using	ComponentDatabasePointer = ComponentDatabase::Pointer

using	ComponentDescriptionType = ComponentDatabase::ComponentDescriptionType

using	ConstPointer = itk::SmartPointer< const Self >

using	DataObjectContainerPointer = ElastixBase::DataObjectContainerPointer

using	DataObjectContainerType = ElastixBase::DataObjectContainerType

using	DataObjectPointer = itk::DataObject::Pointer

using	DBIndexType = ComponentDatabase::IndexType

using	ImageDimensionType = ComponentDatabase::ImageDimensionType

using	ObjectContainerPointer = ElastixBase::ObjectContainerPointer

using	ObjectContainerType = ElastixBase::ObjectContainerType

using	ObjectPointer = itk::Object::Pointer

using	ParameterMapType = itk::ParameterMapInterface::ParameterMapType

using	PixelTypeDescriptionType = ComponentDatabase::PixelTypeDescriptionType

using	Pointer = itk::SmartPointer< Self >

using	PtrToCreator = ComponentDatabase::PtrToCreator

using	Self = TransformixMain

using	Superclass = ElastixMain

Public Types inherited from elastix::ElastixMain
using	ArgumentMapType = Configuration::CommandLineArgumentMapType

using	ComponentDatabasePointer = ComponentDatabase::Pointer

using	ComponentDescriptionType = ComponentDatabase::ComponentDescriptionType

using	ConfigurationPointer = Configuration::Pointer

using	ConstPointer = itk::SmartPointer< const Self >

using	DataObjectContainerPointer = ElastixBase::DataObjectContainerPointer

using	DataObjectContainerType = ElastixBase::DataObjectContainerType

using	DataObjectPointer = itk::DataObject::Pointer

using	DBIndexType = ComponentDatabase::IndexType

using	FlatDirectionCosinesType = ElastixBase::FlatDirectionCosinesType

using	ImageDimensionType = ComponentDatabase::ImageDimensionType

using	ObjectContainerPointer = ElastixBase::ObjectContainerPointer

using	ObjectContainerType = ElastixBase::ObjectContainerType

using	ObjectPointer = itk::Object::Pointer

using	ParameterMapType = itk::ParameterMapInterface::ParameterMapType

using	PixelTypeDescriptionType = ComponentDatabase::PixelTypeDescriptionType

using	Pointer = itk::SmartPointer< Self >

using	PtrToCreator = ComponentDatabase::PtrToCreator

using	Self = ElastixMain

using	Superclass = itk::Object

Public Member Functions
virtual const char *	GetClassName () const

	ITK_DISALLOW_COPY_AND_MOVE (TransformixMain)

int	Run () override

int	Run (const ArgumentMapType &argmap) override

int	Run (const ArgumentMapType &argmap, const ParameterMapType &inputMap) override

int	Run (const ArgumentMapType &argmap, const std::vector< ParameterMapType > &inputMaps, itk::TransformBase *=nullptr)

virtual void	SetInputImageContainer (DataObjectContainerType *inputImageContainer)

Public Member Functions inherited from elastix::ElastixMain
virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap)

virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap, const ParameterMapType &inputMap)

virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap, const std::vector< ParameterMapType > &inputMaps)

virtual const char *	GetClassName () const

virtual DBIndexType	GetDBIndex () const

ElastixBase &	GetElastixBase () const

unsigned int	GetElastixLevel ()

virtual ImageDimensionType	GetFixedImageDimension () const

virtual PixelTypeDescriptionType	GetFixedImagePixelType () const

virtual ImageDimensionType	GetMovingImageDimension () const

virtual PixelTypeDescriptionType	GetMovingImagePixelType () const

virtual const FlatDirectionCosinesType &	GetOriginalFixedImageDirectionFlat () const

unsigned int	GetTotalNumberOfElastixLevels ()

virtual ParameterMapType	GetTransformParametersMap () const

	ITK_DISALLOW_COPY_AND_MOVE (ElastixMain)

	itkGetModifiableObjectMacro (Configuration, Configuration)

	itkGetModifiableObjectMacro (Elastix, itk::Object)

	itkGetModifiableObjectMacro (FinalTransform, itk::Object)

	itkGetModifiableObjectMacro (FixedImageContainer, DataObjectContainerType)

	itkGetModifiableObjectMacro (FixedMaskContainer, DataObjectContainerType)

	itkGetModifiableObjectMacro (InitialTransform, itk::Object)

	itkGetModifiableObjectMacro (MovingImageContainer, DataObjectContainerType)

	itkGetModifiableObjectMacro (MovingMaskContainer, DataObjectContainerType)

	itkGetModifiableObjectMacro (ResultDeformationFieldContainer, DataObjectContainerType)

	itkGetModifiableObjectMacro (ResultImageContainer, DataObjectContainerType)

virtual int	Run ()

virtual int	Run (const ArgumentMapType &argmap)

virtual int	Run (const ArgumentMapType &argmap, const ParameterMapType &inputMap)

virtual void	SetConfiguration (Configuration *_arg)

void	SetElastixLevel (unsigned int level)

virtual void	SetFixedImageContainer (DataObjectContainerType *_arg)

virtual void	SetFixedImageDimension (ImageDimensionType _arg)

virtual void	SetFixedImagePixelType (PixelTypeDescriptionType _arg)

virtual void	SetFixedMaskContainer (DataObjectContainerType *_arg)

virtual void	SetInitialTransform (itk::Object *_arg)

virtual void	SetMaximumNumberOfThreads () const

virtual void	SetMovingImageContainer (DataObjectContainerType *_arg)

virtual void	SetMovingImageDimension (ImageDimensionType _arg)

virtual void	SetMovingImagePixelType (PixelTypeDescriptionType _arg)

virtual void	SetMovingMaskContainer (DataObjectContainerType *_arg)

virtual void	SetOriginalFixedImageDirectionFlat (const FlatDirectionCosinesType &arg)

virtual void	SetProcessPriority () const

virtual void	SetResultDeformationFieldContainer (DataObjectContainerType *_arg)

virtual void	SetResultImageContainer (DataObjectContainerType *_arg)

void	SetTotalNumberOfElastixLevels (unsigned int levels)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from elastix::ElastixMain
static const ComponentDatabase &	GetComponentDatabase ()

static Pointer	New ()

Protected Member Functions
int	InitDBIndex () override

	TransformixMain ()=default

	~TransformixMain () override

Protected Member Functions inherited from elastix::ElastixMain
virtual ObjectPointer	CreateComponent (const ComponentDescriptionType &name)

virtual ObjectContainerPointer	CreateComponents (const ComponentDescriptionType &key, const ComponentDescriptionType &defaultComponentName, int &errorcode, bool mandatoryComponent=true)

	ElastixMain ()

void	GetImageInformationFromFile (const std::string &filename, ImageDimensionType &imageDimension) const

virtual int	InitDBIndex ()

	~ElastixMain () override

Private Member Functions
int	RunWithTransform (itk::TransformBase *)

Additional Inherited Members
Protected Attributes inherited from elastix::ElastixMain
ConfigurationPointer	m_Configuration { Configuration::New() }

std::vector< ConfigurationPointer >	m_Configurations {}

DBIndexType	m_DBIndex { 0 }

ObjectPointer	m_Elastix { nullptr }

ObjectPointer	m_FinalTransform { nullptr }

DataObjectContainerPointer	m_FixedImageContainer { nullptr }

ImageDimensionType	m_FixedImageDimension { 0 }

PixelTypeDescriptionType	m_FixedImagePixelType {}

DataObjectContainerPointer	m_FixedMaskContainer { nullptr }

ObjectPointer	m_InitialTransform { nullptr }

DataObjectContainerPointer	m_MovingImageContainer { nullptr }

ImageDimensionType	m_MovingImageDimension { 0 }

PixelTypeDescriptionType	m_MovingImagePixelType {}

DataObjectContainerPointer	m_MovingMaskContainer { nullptr }

FlatDirectionCosinesType	m_OriginalFixedImageDirection {}

DataObjectContainerPointer	m_ResultDeformationFieldContainer { nullptr }

DataObjectContainerPointer	m_ResultImageContainer { nullptr }

ParameterMapType	m_TransformParametersMap {}