#include <itkPCAMetric.h>

Detailed Description

template<class TFixedImage, class TMovingImage>
class itk::PCAMetric< TFixedImage, TMovingImage >

Definition at line 33 of file itkPCAMetric.h.

Inheritance diagram for itk::PCAMetric< TFixedImage, TMovingImage >:

Data Structures
struct	PCAMetricGetSamplesPerThreadStruct

struct	PCAMetricMultiThreaderParameterType

Public Types
using	ConstPointer = SmartPointer< const Self >

using	ConstPointer = SmartPointer< const Self >

using	DerivativeMatrixType = vnl_matrix< DerivativeValueType >

using	DerivativeValueType = typename DerivativeType::ValueType

using	FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType

using	FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType

using	FixedImageLimiterType = LimiterFunctionBase< RealType, FixedImageDimension >

using	FixedImageLimiterType = LimiterFunctionBase< RealType, FixedImageDimension >

using	FixedImagePixelType = typename FixedImageType::PixelType

using	FixedImagePixelType = typename FixedImageType::PixelType

using	FixedImageSizeType = typename FixedImageRegionType::SizeType

using	FixedImageSizeType = typename FixedImageRegionType::SizeType

using	ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer

using	ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer

using	ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType

using	ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType

using	ImageSamplerPointer = typename ImageSamplerType::Pointer

using	ImageSamplerPointer = typename ImageSamplerType::Pointer

using	ImageSamplerType = ImageSamplerBase< FixedImageType >

using	ImageSamplerType = ImageSamplerBase< FixedImageType >

using	MatrixType = vnl_matrix< RealType >

using	MovingImageDerivativeScalesType = FixedArray< double, Self::MovingImageDimension >

using	MovingImageDerivativeScalesType = FixedArray< double, Self::MovingImageDimension >

using	MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType

using	MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType

using	MovingImageLimiterType = LimiterFunctionBase< RealType, MovingImageDimension >

using	MovingImageLimiterType = LimiterFunctionBase< RealType, MovingImageDimension >

using	MovingImageRegionType = typename MovingImageType::RegionType

using	MovingImageRegionType = typename MovingImageType::RegionType

using	Pointer = SmartPointer< Self >

using	Pointer = SmartPointer< Self >

using	Self = PCAMetric

using	Self = PCAMetric

using	Superclass = AdvancedImageToImageMetric< TFixedImage, TMovingImage >

using	Superclass = AdvancedImageToImageMetric< TFixedImage, TMovingImage >

using	ThreaderType = itk::PlatformMultiThreader

using	ThreadInfoType = typename ThreaderType::WorkUnitInfo

Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using	AdvancedTransformType = AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >

using	BSplineOrder1TransformPointer = typename BSplineOrder1TransformType::Pointer

using	BSplineOrder1TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >

using	BSplineOrder2TransformPointer = typename BSplineOrder2TransformType::Pointer

using	BSplineOrder2TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >

using	BSplineOrder3TransformPointer = typename BSplineOrder3TransformType::Pointer

using	BSplineOrder3TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >

using	CombinationTransformType = AdvancedCombinationTransform< ScalarType, FixedImageDimension >

using	ConstPointer = SmartPointer< const Self >

using	DerivativeValueType = typename DerivativeType::ValueType

using	FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType

using	FixedImageLimiterPointer = typename FixedImageLimiterType::Pointer

using	FixedImageLimiterType = LimiterFunctionBase< RealType, FixedImageDimension >

using	FixedImageMaskSpatialObject2Type = ImageMaskSpatialObject< Self::FixedImageDimension >

using	FixedImagePixelType = typename FixedImageType::PixelType

using	FixedImagePointer = typename FixedImageType::Pointer

using	HessianType = vnl_sparse_matrix< HessianValueType >

using	HessianValueType = typename DerivativeType::ValueType

using	ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer

using	ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType

using	ImageSamplerPointer = typename ImageSamplerType::Pointer

using	ImageSamplerType = ImageSamplerBase< FixedImageType >

using	MovingImageDerivativeScalesType = FixedArray< double, Self::MovingImageDimension >

using	MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType

using	MovingImageLimiterPointer = typename MovingImageLimiterType::Pointer

using	MovingImageLimiterType = LimiterFunctionBase< RealType, MovingImageDimension >

using	MovingImageMaskSpatialObject2Type = ImageMaskSpatialObject< Self::MovingImageDimension >

using	MovingImagePointer = typename MovingImageType::Pointer

using	MovingImageRegionType = typename MovingImageType::RegionType

using	NumberOfParametersType = typename AdvancedTransformType::NumberOfParametersType

using	Pointer = SmartPointer< Self >

using	ScalarType = typename TransformType::ScalarType

using	Self = AdvancedImageToImageMetric

using	Superclass = ImageToImageMetric< TFixedImage, TMovingImage >

using	ThreaderType = itk::PlatformMultiThreader

using	ThreadInfoType = typename ThreaderType::WorkUnitInfo

Public Member Functions
virtual const char *	GetClassName () const

virtual const char *	GetClassName () const

virtual void	GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const

void	GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const override

virtual int	GetNumSamplesLastDimension () const

virtual bool	GetSampleLastDimensionRandomly () const

virtual MeasureType	GetValue (const TransformParametersType &parameters) const

MeasureType	GetValue (const TransformParametersType &parameters) const override

virtual void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const

void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override

void	GetValueAndDerivativeSingleThreaded (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const

virtual void	Initialize ()

void	Initialize () override

	ITK_DISALLOW_COPY_AND_MOVE (PCAMetric)

	ITK_DISALLOW_COPY_AND_MOVE (PCAMetric)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SetDeNoise (bool _arg)

virtual void	SetGridSize (FixedImageSizeType _arg)

virtual void	SetGridSize (FixedImageSizeType _arg)

virtual void	SetNumAdditionalSamplesFixed (unsigned int _arg)

virtual void	SetNumEigenValues (unsigned int _arg)

virtual void	SetNumEigenValues (unsigned int _arg)

virtual void	SetNumSamplesLastDimension (unsigned int _arg)

virtual void	SetReducedDimensionIndex (unsigned int _arg)

virtual void	SetSampleLastDimensionRandomly (bool _arg)

virtual void	SetSubtractMean (bool _arg)

virtual void	SetSubtractMean (bool _arg)

virtual void	SetTransformIsStackTransform (bool _arg)

virtual void	SetTransformIsStackTransform (bool _arg)

virtual void	SetUseDerivativeOfMean (bool _arg)

virtual void	SetVarNoise (double _arg)

Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const

virtual const char *	GetClassName () const

virtual const FixedImageLimiterType *	GetFixedImageLimiter ()

virtual double	GetFixedLimitRangeRatio () const

virtual ImageSamplerType *	GetImageSampler () const

virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()

virtual const MovingImageLimiterType *	GetMovingImageLimiter ()

virtual double	GetMovingLimitRangeRatio () const

virtual double	GetRequiredRatioOfValidSamples () const

virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const

virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const

const AdvancedTransformType *	GetTransform () const override

virtual bool	GetUseFixedImageLimiter () const

virtual bool	GetUseImageSampler () const

virtual const bool &	GetUseMetricSingleThreaded ()

virtual bool	GetUseMovingImageDerivativeScales () const

virtual bool	GetUseMovingImageLimiter () const

virtual const bool &	GetUseMultiThread ()

void	Initialize () override

	ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric)

	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)

virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)

virtual void	SetFixedLimitRangeRatio (double _arg)

virtual void	SetImageSampler (ImageSamplerType *_arg)

virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)

virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)

virtual void	SetMovingLimitRangeRatio (double _arg)

virtual void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)

virtual void	SetRequiredRatioOfValidSamples (double _arg)

virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)

virtual void	SetTransform (AdvancedTransformType *arg)

virtual void	SetUseMetricSingleThreaded (bool _arg)

virtual void	SetUseMovingImageDerivativeScales (bool _arg)

virtual void	SetUseMultiThread (bool _arg)

virtual void	UseMetricSingleThreadedOff ()

virtual void	UseMetricSingleThreadedOn ()

virtual void	UseMultiThreadOff ()

virtual void	UseMultiThreadOn ()

Static Public Member Functions
static Pointer	New ()

static Pointer	New ()

Protected Types
using	BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >

using	BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >

using	CentralDifferenceGradientFilterType = GradientImageFilter< MovingImageType, RealType, RealType >

using	CentralDifferenceGradientFilterType = GradientImageFilter< MovingImageType, RealType, RealType >

using	FixedImageContinuousIndexType = typename itk::ContinuousIndex< CoordinateRepresentationType, FixedImageDimension >

using	FixedImageContinuousIndexType = typename itk::ContinuousIndex< CoordinateRepresentationType, FixedImageDimension >

using	FixedImageIndexType = typename FixedImageType::IndexType

using	FixedImageIndexType = typename FixedImageType::IndexType

using	FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType

using	FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType

using	FixedImagePointType = typename TransformType::InputPointType

using	FixedImagePointType = typename TransformType::InputPointType

using	MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType

using	MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType

using	MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType

using	MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType

using	MovingImageIndexType = typename MovingImageType::IndexType

using	MovingImageIndexType = typename MovingImageType::IndexType

using	MovingImagePointType = typename TransformType::OutputPointType

using	MovingImagePointType = typename TransformType::OutputPointType

using	NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType

using	NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType

Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using	BSplineInterpolatorFloatPointer = typename BSplineInterpolatorFloatType::Pointer

using	BSplineInterpolatorFloatType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >

using	BSplineInterpolatorPointer = typename BSplineInterpolatorType::Pointer

using	BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >

using	CentralDifferenceGradientFilterPointer = typename CentralDifferenceGradientFilterType::Pointer

using	CentralDifferenceGradientFilterType = GradientImageFilter< MovingImageType, RealType, RealType >

using	FixedImageIndexType = typename FixedImageType::IndexType

using	FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType

using	FixedImagePointType = typename TransformType::InputPointType

using	LinearInterpolatorPointer = typename LinearInterpolatorType::Pointer

using	LinearInterpolatorType = AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >

using	MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType

using	MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType

using	MovingImageIndexType = typename MovingImageType::IndexType

using	MovingImagePointType = typename TransformType::OutputPointType

using	NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType

using	ReducedBSplineInterpolatorPointer = typename ReducedBSplineInterpolatorType::Pointer

using	ReducedBSplineInterpolatorType = ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >

Protected Member Functions
void	AfterThreadedComputeDerivative (DerivativeType &derivative) const

void	AfterThreadedGetSamples (MeasureType &value) const

void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const

void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const override

void	InitializeThreadingParameters () const override

void	LaunchComputeDerivativeThreaderCallback () const

void	LaunchGetSamplesThreaderCallback () const

	PCAMetric ()

	PCAMetric ()

void	PrintSelf (std::ostream &os, Indent indent) const

void	PrintSelf (std::ostream &os, Indent indent) const override

void	ThreadedComputeDerivative (ThreadIdType threadID)

void	ThreadedGetSamples (ThreadIdType threadID)

virtual	~PCAMetric ()

	~PCAMetric () override=default

Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
	AdvancedImageToImageMetric ()

virtual void	AfterThreadedGetValue (MeasureType &value) const

virtual void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const

virtual void	CheckForAdvancedTransform ()

virtual void	CheckForBSplineInterpolator ()

virtual void	CheckForBSplineTransform () const

virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const

virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const

virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const

virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const

bool	FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const

virtual void	InitializeImageSampler ()

virtual void	InitializeLimiters ()

virtual void	InitializeThreadingParameters () const

virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)

void	LaunchGetValueAndDerivativeThreaderCallback () const

void	LaunchGetValueThreaderCallback () const

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual void	SetUseFixedImageLimiter (bool _arg)

virtual void	SetUseImageSampler (bool _arg)

virtual void	SetUseMovingImageLimiter (bool _arg)

virtual void	ThreadedGetValue (ThreadIdType threadID)

virtual void	ThreadedGetValueAndDerivative (ThreadIdType threadID)

MovingImagePointType	TransformPoint (const FixedImagePointType &fixedImagePoint) const

	~AdvancedImageToImageMetric () override=default

Static Protected Member Functions
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ComputeDerivativeThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetSamplesThreaderCallback (void *arg)

Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)

Protected Attributes
vnl_vector< double >	m_eigenValues

vnl_vector< double >	m_fifthEigenVector

vnl_vector< double >	m_firstEigenVector

vnl_vector< double >	m_fourthEigenVector

vnl_vector< double >	m_normdCdmu

int	m_NumberOfSamples

vnl_vector< double >	m_secondEigenVector

vnl_vector< double >	m_seventhEigenVector

vnl_vector< double >	m_sixthEigenVector

vnl_vector< double >	m_thirdEigenVector

Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer	m_AdvancedTransform { nullptr }

BSplineInterpolatorPointer	m_BSplineInterpolator { nullptr }

BSplineInterpolatorFloatPointer	m_BSplineInterpolatorFloat { nullptr }

CentralDifferenceGradientFilterPointer	m_CentralDifferenceGradientFilter { nullptr }

FixedImageLimiterPointer	m_FixedImageLimiter { nullptr }

FixedImageLimiterOutputType	m_FixedImageMaxLimit { 1 }

FixedImageLimiterOutputType	m_FixedImageMinLimit { 0 }

FixedImagePixelType	m_FixedImageTrueMax { 1 }

FixedImagePixelType	m_FixedImageTrueMin { 0 }

double	m_FixedLimitRangeRatio { 0.01 }

std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]>	m_GetValueAndDerivativePerThreadVariables

ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize { 0 }

std::unique_ptr< AlignedGetValuePerThreadStruct[]>	m_GetValuePerThreadVariables { nullptr }

ThreadIdType	m_GetValuePerThreadVariablesSize { 0 }

ImageSamplerPointer	m_ImageSampler { nullptr }

bool	m_InterpolatorIsBSpline { false }

bool	m_InterpolatorIsBSplineFloat { false }

bool	m_InterpolatorIsLinear { false }

bool	m_InterpolatorIsReducedBSpline { false }

LinearInterpolatorPointer	m_LinearInterpolator { nullptr }

MovingImageLimiterPointer	m_MovingImageLimiter { nullptr }

MovingImageLimiterOutputType	m_MovingImageMaxLimit { 1 }

MovingImageLimiterOutputType	m_MovingImageMinLimit { 0 }

MovingImagePixelType	m_MovingImageTrueMax { 1 }

MovingImagePixelType	m_MovingImageTrueMin { 0 }

double	m_MovingLimitRangeRatio { 0.01 }

ReducedBSplineInterpolatorPointer	m_ReducedBSplineInterpolator { nullptr }

MultiThreaderParameterType	m_ThreaderMetricParameters

bool	m_TransformIsAdvanced { false }

bool	m_TransformIsBSpline { false }

bool	m_UseMetricSingleThreaded { true }

bool	m_UseMultiThread { false }

bool	m_UseOpenMP

Private Member Functions
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedPCAMetricGetSamplesPerThreadStruct, AlignedPCAMetricGetSamplesPerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, PCAMetricGetSamplesPerThreadStruct, PaddedPCAMetricGetSamplesPerThreadStruct)

void	SampleRandom (const int n, const int m, std::vector< int > &numbers) const

Private Attributes
MatrixType	m_Atmm

DerivativeMatrixType	m_CSv

bool	m_DeNoise

unsigned int	m_G

FixedImageSizeType	m_GridSize

unsigned int	m_LastDimIndex

unsigned int	m_NumAdditionalSamplesFixed

unsigned int	m_NumEigenValues { 6 }

unsigned int	m_NumSamplesLastDimension

std::vector< AlignedPCAMetricGetSamplesPerThreadStruct >	m_PCAMetricGetSamplesPerThreadVariables

PCAMetricMultiThreaderParameterType	m_PCAMetricThreaderParameters

std::vector< unsigned int >	m_PixelStartIndex

unsigned int	m_ReducedDimensionIndex

bool	m_SampleLastDimensionRandomly

bool	m_SubtractMean { false }

DerivativeMatrixType	m_Sv

bool	m_TransformIsStackTransform { false }

bool	m_UseDerivativeOfMean

double	m_VarNoise

DerivativeMatrixType	m_vdSdmu_part1

DerivativeMatrixType	m_vSAtmm

Member Typedef Documentation

◆ BSplineInterpolatorType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::BSplineInterpolatorType = BSplineInterpolateImageFunction<MovingImageType, CoordinateRepresentationType, double>

protected

Typedefs used for computing image derivatives.

Definition at line 321 of file itkAdvancedImageToImageMetric.h.

◆ BSplineInterpolatorType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::BSplineInterpolatorType = BSplineInterpolateImageFunction<MovingImageType, CoordinateRepresentationType, double>

protected

Typedefs used for computing image derivatives.

Definition at line 321 of file itkAdvancedImageToImageMetric.h.

◆ CentralDifferenceGradientFilterType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::CentralDifferenceGradientFilterType = GradientImageFilter<MovingImageType, RealType, RealType>

protected

Definition at line 333 of file itkAdvancedImageToImageMetric.h.

◆ CentralDifferenceGradientFilterType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::CentralDifferenceGradientFilterType = GradientImageFilter<MovingImageType, RealType, RealType>

protected

Definition at line 333 of file itkAdvancedImageToImageMetric.h.

◆ ConstPointer [1/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::ConstPointer = SmartPointer<const Self>

Definition at line 42 of file itkPCAMetric.h.

◆ ConstPointer [2/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::ConstPointer = SmartPointer<const Self>

Definition at line 41 of file itkPCAMetric_F_multithreaded.h.

◆ DerivativeMatrixType

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::DerivativeMatrixType = vnl_matrix<DerivativeValueType>

Definition at line 102 of file itkPCAMetric_F_multithreaded.h.

◆ DerivativeValueType

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::DerivativeValueType = typename DerivativeType::ValueType

Definition at line 97 of file itkPCAMetric_F_multithreaded.h.

◆ FixedImageContinuousIndexType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::FixedImageContinuousIndexType = typename itk::ContinuousIndex<CoordinateRepresentationType, FixedImageDimension>

protected

Definition at line 150 of file itkPCAMetric.h.

◆ FixedImageContinuousIndexType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::FixedImageContinuousIndexType = typename itk::ContinuousIndex<CoordinateRepresentationType, FixedImageDimension>

protected

Definition at line 152 of file itkPCAMetric_F_multithreaded.h.

◆ FixedImageIndexType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexType = typename FixedImageType::IndexType

protected

Protected Typedefs Typedefs for indices and points.

Definition at line 313 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageIndexType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexType = typename FixedImageType::IndexType

protected

Protected Typedefs Typedefs for indices and points.

Definition at line 313 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageIndexValueType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType

protected

Definition at line 314 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageIndexValueType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType

protected

Definition at line 314 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageLimiterOutputType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType

Definition at line 151 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageLimiterOutputType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType

Definition at line 151 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageLimiterType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterType = LimiterFunctionBase<RealType, FixedImageDimension>

Typedefs for Limiter support.

Definition at line 149 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageLimiterType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterType = LimiterFunctionBase<RealType, FixedImageDimension>

Typedefs for Limiter support.

Definition at line 149 of file itkAdvancedImageToImageMetric.h.

◆ FixedImagePixelType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType = typename FixedImageType::PixelType

Some useful extra typedefs.

Definition at line 138 of file itkAdvancedImageToImageMetric.h.

◆ FixedImagePixelType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType = typename FixedImageType::PixelType

Some useful extra typedefs.

Definition at line 138 of file itkAdvancedImageToImageMetric.h.

◆ FixedImagePointType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType = typename TransformType::InputPointType

protected

Definition at line 316 of file itkAdvancedImageToImageMetric.h.

◆ FixedImagePointType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType = typename TransformType::InputPointType

protected

Definition at line 316 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageSizeType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::FixedImageSizeType = typename FixedImageRegionType::SizeType

Definition at line 45 of file itkPCAMetric.h.

◆ FixedImageSizeType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::FixedImageSizeType = typename FixedImageRegionType::SizeType

Definition at line 44 of file itkPCAMetric_F_multithreaded.h.

◆ ImageSampleContainerPointer [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer

Definition at line 146 of file itkAdvancedImageToImageMetric.h.

◆ ImageSampleContainerPointer [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer

Definition at line 146 of file itkAdvancedImageToImageMetric.h.

◆ ImageSampleContainerType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType

Definition at line 145 of file itkAdvancedImageToImageMetric.h.

◆ ImageSampleContainerType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType

Definition at line 145 of file itkAdvancedImageToImageMetric.h.

◆ ImageSamplerPointer [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerPointer = typename ImageSamplerType::Pointer

Definition at line 144 of file itkAdvancedImageToImageMetric.h.

◆ ImageSamplerPointer [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerPointer = typename ImageSamplerType::Pointer

Definition at line 144 of file itkAdvancedImageToImageMetric.h.

◆ ImageSamplerType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerType = ImageSamplerBase<FixedImageType>

Typedefs for the ImageSampler.

Definition at line 143 of file itkAdvancedImageToImageMetric.h.

◆ ImageSamplerType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerType = ImageSamplerBase<FixedImageType>

Typedefs for the ImageSampler.

Definition at line 143 of file itkAdvancedImageToImageMetric.h.

◆ MatrixType

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::MatrixType = vnl_matrix<RealType>

Definition at line 101 of file itkPCAMetric_F_multithreaded.h.

◆ MovingImageContinuousIndexType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType

protected

Definition at line 318 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageContinuousIndexType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType

protected

Definition at line 318 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageDerivativeScalesType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeScalesType = FixedArray<double, Self::MovingImageDimension>

Definition at line 140 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageDerivativeScalesType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeScalesType = FixedArray<double, Self::MovingImageDimension>

Definition at line 140 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageDerivativeType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType

protected

Definition at line 332 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageDerivativeType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType

protected

Definition at line 332 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageIndexType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageIndexType = typename MovingImageType::IndexType

protected

Definition at line 315 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageIndexType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageIndexType = typename MovingImageType::IndexType

protected

Definition at line 315 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageLimiterOutputType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType

Definition at line 154 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageLimiterOutputType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType

Definition at line 154 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageLimiterType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterType = LimiterFunctionBase<RealType, MovingImageDimension>

Definition at line 152 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageLimiterType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterType = LimiterFunctionBase<RealType, MovingImageDimension>

Definition at line 152 of file itkAdvancedImageToImageMetric.h.

◆ MovingImagePointType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType = typename TransformType::OutputPointType

protected

Definition at line 317 of file itkAdvancedImageToImageMetric.h.

◆ MovingImagePointType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType = typename TransformType::OutputPointType

protected

Definition at line 317 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageRegionType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageRegionType = typename MovingImageType::RegionType

Definition at line 139 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageRegionType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageRegionType = typename MovingImageType::RegionType

Definition at line 139 of file itkAdvancedImageToImageMetric.h.

◆ NonZeroJacobianIndicesType [1/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType

protected

Typedefs for support of sparse Jacobians and compact support of transformations.

Definition at line 337 of file itkAdvancedImageToImageMetric.h.

◆ NonZeroJacobianIndicesType [2/2]

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType

protected

Typedefs for support of sparse Jacobians and compact support of transformations.

Definition at line 337 of file itkAdvancedImageToImageMetric.h.

◆ Pointer [1/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::Pointer = SmartPointer<Self>

Definition at line 41 of file itkPCAMetric.h.

◆ Pointer [2/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::Pointer = SmartPointer<Self>

Definition at line 40 of file itkPCAMetric_F_multithreaded.h.

◆ Self [1/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::Self = PCAMetric

Standard class typedefs.

Definition at line 39 of file itkPCAMetric.h.

◆ Self [2/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::Self = PCAMetric

Standard class typedefs.

Definition at line 38 of file itkPCAMetric_F_multithreaded.h.

◆ Superclass [1/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::Superclass = AdvancedImageToImageMetric<TFixedImage, TMovingImage>

Definition at line 40 of file itkPCAMetric.h.

◆ Superclass [2/2]

template<class TFixedImage , class TMovingImage >

using itk::PCAMetric< TFixedImage, TMovingImage >::Superclass = AdvancedImageToImageMetric<TFixedImage, TMovingImage>

Definition at line 39 of file itkPCAMetric_F_multithreaded.h.

◆ ThreaderType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ThreaderType = itk::PlatformMultiThreader

Typedefs for multi-threading.

Definition at line 175 of file itkAdvancedImageToImageMetric.h.

◆ ThreadInfoType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ThreadInfoType = typename ThreaderType::WorkUnitInfo

Definition at line 176 of file itkAdvancedImageToImageMetric.h.

Constructor & Destructor Documentation

◆ PCAMetric() [1/2]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::PCAMetric ( )

protected

◆ ~PCAMetric() [1/2]

template<class TFixedImage , class TMovingImage >

virtual itk::PCAMetric< TFixedImage, TMovingImage >::~PCAMetric ( )

inlineprotectedvirtual

Reimplemented in elastix::PCAMetric< TElastix >.

Definition at line 139 of file itkPCAMetric.h.

◆ PCAMetric() [2/2]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::PCAMetric ( )

protected

◆ ~PCAMetric() [2/2]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::~PCAMetric ( )

overrideprotecteddefault

Member Function Documentation

◆ AfterThreadedComputeDerivative()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::AfterThreadedComputeDerivative ( DerivativeType & derivative ) const

protected

◆ AfterThreadedGetSamples()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::AfterThreadedGetSamples ( MeasureType & value ) const

protected

Gather the values and derivatives from all threads

◆ ComputeDerivativeThreaderCallback()

template<class TFixedImage , class TMovingImage >

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION itk::PCAMetric< TFixedImage, TMovingImage >::ComputeDerivativeThreaderCallback ( void * arg )

staticprotected

◆ EvaluateTransformJacobianInnerProduct() [1/2]

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::EvaluateTransformJacobianInnerProduct	(	const TransformJacobianType &	jacobian,
		const MovingImageDerivativeType &	movingImageDerivative,
		DerivativeType &	imageJacobian
	)		const

protectedvirtual

Computes the innerproduct of transform Jacobian with moving image gradient. The results are stored in imageJacobian, which is supposed to have the right size (same length as Jacobian's number of columns).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

◆ EvaluateTransformJacobianInnerProduct() [2/2]

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::EvaluateTransformJacobianInnerProduct	(	const TransformJacobianType &	jacobian,
		const MovingImageDerivativeType &	movingImageDerivative,
		DerivativeType &	imageJacobian
	)		const

overrideprotectedvirtual

Computes the innerproduct of transform Jacobian with moving image gradient. The results are stored in imageJacobian, which is supposed to have the right size (same length as Jacobian's number of columns).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

◆ GetClassName() [1/2]

template<class TFixedImage , class TMovingImage >

virtual const char * itk::PCAMetric< TFixedImage, TMovingImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in elastix::PCAMetric< TElastix >.

◆ GetClassName() [2/2]

template<class TFixedImage , class TMovingImage >

virtual const char * itk::PCAMetric< TFixedImage, TMovingImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in elastix::PCAMetric< TElastix >.

◆ GetDerivative() [1/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::GetDerivative	(	const TransformParametersType &	parameters,
		DerivativeType &	derivative
	)		const

virtual

Get the derivatives of the match measure.

◆ GetDerivative() [2/2]

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::GetDerivative	(	const TransformParametersType &	parameters,
		DerivativeType &	derivative
	)		const

override

Get the derivatives of the match measure.

◆ GetNumSamplesLastDimension()

template<class TFixedImage , class TMovingImage >

virtual int itk::PCAMetric< TFixedImage, TMovingImage >::GetNumSamplesLastDimension ( ) const

virtual

◆ GetSampleLastDimensionRandomly()

template<class TFixedImage , class TMovingImage >

virtual bool itk::PCAMetric< TFixedImage, TMovingImage >::GetSampleLastDimensionRandomly ( ) const

virtual

Get functions.

◆ GetSamplesThreaderCallback()

template<class TFixedImage , class TMovingImage >

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION itk::PCAMetric< TFixedImage, TMovingImage >::GetSamplesThreaderCallback ( void * arg )

staticprotected

Helper function to launch the threads.

◆ GetValue() [1/2]

template<class TFixedImage , class TMovingImage >

virtual MeasureType itk::PCAMetric< TFixedImage, TMovingImage >::GetValue ( const TransformParametersType & parameters ) const

virtual

Get the value for single valued optimizers.

◆ GetValue() [2/2]

template<class TFixedImage , class TMovingImage >

MeasureType itk::PCAMetric< TFixedImage, TMovingImage >::GetValue ( const TransformParametersType & parameters ) const

override

Get the value for single valued optimizers.

◆ GetValueAndDerivative() [1/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::GetValueAndDerivative	(	const TransformParametersType &	parameters,
		MeasureType &	Value,
		DerivativeType &	Derivative
	)		const

virtual

Get value and derivatives for multiple valued optimizers.

◆ GetValueAndDerivative() [2/2]

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::GetValueAndDerivative	(	const TransformParametersType &	parameters,
		MeasureType &	Value,
		DerivativeType &	Derivative
	)		const

override

◆ GetValueAndDerivativeSingleThreaded()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeSingleThreaded	(	const TransformParametersType &	parameters,
		MeasureType &	Value,
		DerivativeType &	Derivative
	)		const

Get value and derivatives for multiple valued optimizers.

◆ Initialize() [1/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::Initialize ( )

virtual

Initialize the Metric by making sure that all the components are present and plugged together correctly.

Call the superclass' implementation.

Reimplemented in elastix::PCAMetric< TElastix >.

◆ Initialize() [2/2]

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::Initialize ( )

override

Initialize the Metric by making sure that all the components are present and plugged together correctly.

Call the superclass' implementation.

◆ InitializeThreadingParameters()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::InitializeThreadingParameters ( ) const

overrideprotectedvirtual

Initialize some multi-threading related parameters.

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

◆ ITK_DISALLOW_COPY_AND_MOVE() [1/2]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::ITK_DISALLOW_COPY_AND_MOVE ( PCAMetric< TFixedImage, TMovingImage > )

◆ ITK_DISALLOW_COPY_AND_MOVE() [2/2]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::ITK_DISALLOW_COPY_AND_MOVE ( PCAMetric< TFixedImage, TMovingImage > )

◆ itkAlignedTypedef()

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::itkAlignedTypedef	(	ITK_CACHE_LINE_ALIGNMENT	,
		PaddedPCAMetricGetSamplesPerThreadStruct	,
		AlignedPCAMetricGetSamplesPerThreadStruct
	)

private

◆ itkPadStruct()

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::itkPadStruct	(	ITK_CACHE_LINE_ALIGNMENT	,
		PCAMetricGetSamplesPerThreadStruct	,
		PaddedPCAMetricGetSamplesPerThreadStruct
	)

private

◆ itkStaticConstMacro() [1/4]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

◆ itkStaticConstMacro() [2/4]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

◆ itkStaticConstMacro() [3/4]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

The moving image dimension.

◆ itkStaticConstMacro() [4/4]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

The moving image dimension.

◆ LaunchComputeDerivativeThreaderCallback()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::LaunchComputeDerivativeThreaderCallback ( ) const

protected

◆ LaunchGetSamplesThreaderCallback()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::LaunchGetSamplesThreaderCallback ( ) const

protected

Helper functions to launch the threads.

◆ New() [1/2]

template<class TFixedImage , class TMovingImage >

static Pointer itk::PCAMetric< TFixedImage, TMovingImage >::New ( )

static

Method for creation through the object factory.

◆ New() [2/2]

template<class TFixedImage , class TMovingImage >

static Pointer itk::PCAMetric< TFixedImage, TMovingImage >::New ( )

static

Method for creation through the object factory.

◆ PrintSelf() [1/2]

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protected

◆ PrintSelf() [2/2]

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

overrideprotected

◆ SampleRandom()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::SampleRandom	(	const int	n,
		const int	m,
		std::vector< int > &	numbers
	)		const

private

Sample n random numbers from 0..m and add them to the vector.

◆ SetDeNoise()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetDeNoise ( bool _arg )

virtual

◆ SetGridSize() [1/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetGridSize ( FixedImageSizeType _arg )

virtual

◆ SetGridSize() [2/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetGridSize ( FixedImageSizeType _arg )

virtual

◆ SetNumAdditionalSamplesFixed()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetNumAdditionalSamplesFixed ( unsigned int _arg )

virtual

◆ SetNumEigenValues() [1/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetNumEigenValues ( unsigned int _arg )

virtual

◆ SetNumEigenValues() [2/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetNumEigenValues ( unsigned int _arg )

virtual

◆ SetNumSamplesLastDimension()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetNumSamplesLastDimension ( unsigned int _arg )

virtual

◆ SetReducedDimensionIndex()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetReducedDimensionIndex ( unsigned int _arg )

virtual

◆ SetSampleLastDimensionRandomly()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetSampleLastDimensionRandomly ( bool _arg )

virtual

Set functions.

◆ SetSubtractMean() [1/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetSubtractMean ( bool _arg )

virtual

◆ SetSubtractMean() [2/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetSubtractMean ( bool _arg )

virtual

Set functions.

◆ SetTransformIsStackTransform() [1/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetTransformIsStackTransform ( bool _arg )

virtual

◆ SetTransformIsStackTransform() [2/2]

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetTransformIsStackTransform ( bool _arg )

virtual

◆ SetUseDerivativeOfMean()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetUseDerivativeOfMean ( bool _arg )

virtual

◆ SetVarNoise()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric< TFixedImage, TMovingImage >::SetVarNoise ( double _arg )

virtual

◆ ThreadedComputeDerivative()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::ThreadedComputeDerivative ( ThreadIdType threadID )

protected

◆ ThreadedGetSamples()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric< TFixedImage, TMovingImage >::ThreadedGetSamples ( ThreadIdType threadID )

protected

Get value and derivatives for each thread.

Field Documentation

◆ m_Atmm

template<class TFixedImage , class TMovingImage >

MatrixType itk::PCAMetric< TFixedImage, TMovingImage >::m_Atmm

mutableprivate

Definition at line 242 of file itkPCAMetric_F_multithreaded.h.

◆ m_CSv

template<class TFixedImage , class TMovingImage >

DerivativeMatrixType itk::PCAMetric< TFixedImage, TMovingImage >::m_CSv

mutableprivate

Definition at line 244 of file itkPCAMetric_F_multithreaded.h.

◆ m_DeNoise

template<class TFixedImage , class TMovingImage >

bool itk::PCAMetric< TFixedImage, TMovingImage >::m_DeNoise

private

Definition at line 189 of file itkPCAMetric.h.

◆ m_eigenValues

template<class TFixedImage , class TMovingImage >

vnl_vector<double> itk::PCAMetric< TFixedImage, TMovingImage >::m_eigenValues

mutableprotected

Definition at line 174 of file itkPCAMetric.h.

◆ m_fifthEigenVector

template<class TFixedImage , class TMovingImage >

vnl_vector<double> itk::PCAMetric< TFixedImage, TMovingImage >::m_fifthEigenVector

mutableprotected

Definition at line 171 of file itkPCAMetric.h.

◆ m_firstEigenVector

template<class TFixedImage , class TMovingImage >

vnl_vector<double> itk::PCAMetric< TFixedImage, TMovingImage >::m_firstEigenVector

mutableprotected

Definition at line 167 of file itkPCAMetric.h.

◆ m_fourthEigenVector

template<class TFixedImage , class TMovingImage >

vnl_vector<double> itk::PCAMetric< TFixedImage, TMovingImage >::m_fourthEigenVector

mutableprotected

Definition at line 170 of file itkPCAMetric.h.

◆ m_G

template<class TFixedImage , class TMovingImage >

unsigned int itk::PCAMetric< TFixedImage, TMovingImage >::m_G

private

Definition at line 225 of file itkPCAMetric_F_multithreaded.h.

◆ m_GridSize

template<class TFixedImage , class TMovingImage >

FixedImageSizeType itk::PCAMetric< TFixedImage, TMovingImage >::m_GridSize

private

GridSize of B-spline transform.

Definition at line 197 of file itkPCAMetric.h.

◆ m_LastDimIndex

template<class TFixedImage , class TMovingImage >

unsigned int itk::PCAMetric< TFixedImage, TMovingImage >::m_LastDimIndex

private

Definition at line 226 of file itkPCAMetric_F_multithreaded.h.

◆ m_normdCdmu

template<class TFixedImage , class TMovingImage >

vnl_vector<double> itk::PCAMetric< TFixedImage, TMovingImage >::m_normdCdmu

mutableprotected

Definition at line 175 of file itkPCAMetric.h.

◆ m_NumAdditionalSamplesFixed

template<class TFixedImage , class TMovingImage >

unsigned int itk::PCAMetric< TFixedImage, TMovingImage >::m_NumAdditionalSamplesFixed

private

Definition at line 186 of file itkPCAMetric.h.

◆ m_NumberOfSamples

template<class TFixedImage , class TMovingImage >

int itk::PCAMetric< TFixedImage, TMovingImage >::m_NumberOfSamples

mutableprotected

Definition at line 176 of file itkPCAMetric.h.

◆ m_NumEigenValues

template<class TFixedImage , class TMovingImage >

unsigned int itk::PCAMetric< TFixedImage, TMovingImage >::m_NumEigenValues { 6 }

private

Integer to indicate how many eigenvalues you want to use in the metric

Definition at line 203 of file itkPCAMetric.h.

◆ m_NumSamplesLastDimension

template<class TFixedImage , class TMovingImage >

unsigned int itk::PCAMetric< TFixedImage, TMovingImage >::m_NumSamplesLastDimension

private

Definition at line 185 of file itkPCAMetric.h.

◆ m_PCAMetricGetSamplesPerThreadVariables

template<class TFixedImage , class TMovingImage >

std::vector<AlignedPCAMetricGetSamplesPerThreadStruct> itk::PCAMetric< TFixedImage, TMovingImage >::m_PCAMetricGetSamplesPerThreadVariables

mutableprivate

Definition at line 223 of file itkPCAMetric_F_multithreaded.h.

◆ m_PCAMetricThreaderParameters

template<class TFixedImage , class TMovingImage >

PCAMetricMultiThreaderParameterType itk::PCAMetric< TFixedImage, TMovingImage >::m_PCAMetricThreaderParameters

private

Definition at line 207 of file itkPCAMetric_F_multithreaded.h.

◆ m_PixelStartIndex

template<class TFixedImage , class TMovingImage >

std::vector<unsigned int> itk::PCAMetric< TFixedImage, TMovingImage >::m_PixelStartIndex

mutableprivate

Matrices, needed for derivative calculation

Definition at line 241 of file itkPCAMetric_F_multithreaded.h.

◆ m_ReducedDimensionIndex

template<class TFixedImage , class TMovingImage >

unsigned int itk::PCAMetric< TFixedImage, TMovingImage >::m_ReducedDimensionIndex

private

Definition at line 187 of file itkPCAMetric.h.

◆ m_SampleLastDimensionRandomly

template<class TFixedImage , class TMovingImage >

bool itk::PCAMetric< TFixedImage, TMovingImage >::m_SampleLastDimensionRandomly

private

Variables to control random sampling in last dimension.

Definition at line 184 of file itkPCAMetric.h.

◆ m_secondEigenVector

template<class TFixedImage , class TMovingImage >

vnl_vector<double> itk::PCAMetric< TFixedImage, TMovingImage >::m_secondEigenVector

mutableprotected

Definition at line 168 of file itkPCAMetric.h.

◆ m_seventhEigenVector

template<class TFixedImage , class TMovingImage >

vnl_vector<double> itk::PCAMetric< TFixedImage, TMovingImage >::m_seventhEigenVector

mutableprotected

Definition at line 173 of file itkPCAMetric.h.

◆ m_sixthEigenVector

template<class TFixedImage , class TMovingImage >

vnl_vector<double> itk::PCAMetric< TFixedImage, TMovingImage >::m_sixthEigenVector

mutableprotected

Definition at line 172 of file itkPCAMetric.h.

◆ m_SubtractMean

template<class TFixedImage , class TMovingImage >

bool itk::PCAMetric< TFixedImage, TMovingImage >::m_SubtractMean { false }

private

Bool to determine if we want to subtract the mean derivate from the derivative elements.

Definition at line 194 of file itkPCAMetric.h.

◆ m_Sv

template<class TFixedImage , class TMovingImage >

DerivativeMatrixType itk::PCAMetric< TFixedImage, TMovingImage >::m_Sv

mutableprivate

Definition at line 245 of file itkPCAMetric_F_multithreaded.h.

◆ m_thirdEigenVector

template<class TFixedImage , class TMovingImage >

vnl_vector<double> itk::PCAMetric< TFixedImage, TMovingImage >::m_thirdEigenVector

mutableprotected

Definition at line 169 of file itkPCAMetric.h.

◆ m_TransformIsStackTransform

template<class TFixedImage , class TMovingImage >

bool itk::PCAMetric< TFixedImage, TMovingImage >::m_TransformIsStackTransform { false }

private

Bool to indicate if the transform used is a stacktransform. Set by elx files.

Definition at line 200 of file itkPCAMetric.h.

◆ m_UseDerivativeOfMean

template<class TFixedImage , class TMovingImage >

bool itk::PCAMetric< TFixedImage, TMovingImage >::m_UseDerivativeOfMean

private

Definition at line 205 of file itkPCAMetric.h.

◆ m_VarNoise

template<class TFixedImage , class TMovingImage >

double itk::PCAMetric< TFixedImage, TMovingImage >::m_VarNoise

private

Definition at line 191 of file itkPCAMetric.h.

◆ m_vdSdmu_part1

template<class TFixedImage , class TMovingImage >

DerivativeMatrixType itk::PCAMetric< TFixedImage, TMovingImage >::m_vdSdmu_part1

mutableprivate

Definition at line 246 of file itkPCAMetric_F_multithreaded.h.

◆ m_vSAtmm

template<class TFixedImage , class TMovingImage >

DerivativeMatrixType itk::PCAMetric< TFixedImage, TMovingImage >::m_vSAtmm

mutableprivate

Definition at line 243 of file itkPCAMetric_F_multithreaded.h.

Detailed Description

Data Structures

Public Types

Public Member Functions

Static Public Member Functions

Protected Types

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Member Typedef Documentation

◆ BSplineInterpolatorType [1/2]

◆ BSplineInterpolatorType [2/2]

◆ CentralDifferenceGradientFilterType [1/2]

◆ CentralDifferenceGradientFilterType [2/2]

◆ ConstPointer [1/2]

◆ ConstPointer [2/2]

◆ DerivativeMatrixType

◆ DerivativeValueType

◆ FixedImageContinuousIndexType [1/2]

◆ FixedImageContinuousIndexType [2/2]

◆ FixedImageIndexType [1/2]

◆ FixedImageIndexType [2/2]

◆ FixedImageIndexValueType [1/2]

◆ FixedImageIndexValueType [2/2]

◆ FixedImageLimiterOutputType [1/2]

◆ FixedImageLimiterOutputType [2/2]

◆ FixedImageLimiterType [1/2]

◆ FixedImageLimiterType [2/2]

◆ FixedImagePixelType [1/2]

◆ FixedImagePixelType [2/2]

◆ FixedImagePointType [1/2]

◆ FixedImagePointType [2/2]

◆ FixedImageSizeType [1/2]

◆ FixedImageSizeType [2/2]

◆ ImageSampleContainerPointer [1/2]

◆ ImageSampleContainerPointer [2/2]

◆ ImageSampleContainerType [1/2]

◆ ImageSampleContainerType [2/2]

◆ ImageSamplerPointer [1/2]

◆ ImageSamplerPointer [2/2]

◆ ImageSamplerType [1/2]

◆ ImageSamplerType [2/2]

◆ MatrixType

◆ MovingImageContinuousIndexType [1/2]

◆ MovingImageContinuousIndexType [2/2]

◆ MovingImageDerivativeScalesType [1/2]

◆ MovingImageDerivativeScalesType [2/2]

◆ MovingImageDerivativeType [1/2]

◆ MovingImageDerivativeType [2/2]

◆ MovingImageIndexType [1/2]

◆ MovingImageIndexType [2/2]

◆ MovingImageLimiterOutputType [1/2]

◆ MovingImageLimiterOutputType [2/2]

◆ MovingImageLimiterType [1/2]

◆ MovingImageLimiterType [2/2]

◆ MovingImagePointType [1/2]

◆ MovingImagePointType [2/2]

◆ MovingImageRegionType [1/2]

◆ MovingImageRegionType [2/2]

◆ NonZeroJacobianIndicesType [1/2]

◆ NonZeroJacobianIndicesType [2/2]

◆ Pointer [1/2]

◆ Pointer [2/2]

◆ Self [1/2]

◆ Self [2/2]

◆ Superclass [1/2]

◆ Superclass [2/2]

◆ ThreaderType

◆ ThreadInfoType

Constructor & Destructor Documentation

◆ PCAMetric() [1/2]

◆ ~PCAMetric() [1/2]

◆ PCAMetric() [2/2]

◆ ~PCAMetric() [2/2]

Member Function Documentation

◆ AfterThreadedComputeDerivative()

◆ AfterThreadedGetSamples()

◆ ComputeDerivativeThreaderCallback()