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itk::PCAMetric2< TFixedImage, TMovingImage > Class Template Reference

#include <itkPCAMetric2.h>

Detailed Description

template<class TFixedImage, class TMovingImage>
class itk::PCAMetric2< TFixedImage, TMovingImage >

Definition at line 31 of file itkPCAMetric2.h.

Inheritance diagram for itk::PCAMetric2< TFixedImage, TMovingImage >:
Inheritance graph
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Public Types

using ConstPointer = SmartPointer< const Self >
 
using FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType
 
using FixedImageLimiterType = LimiterFunctionBase< RealType, FixedImageDimension >
 
using FixedImagePixelType = typename FixedImageType::PixelType
 
using FixedImageSizeType = typename FixedImageRegionType::SizeType
 
using ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer
 
using ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType
 
using ImageSamplerPointer = typename ImageSamplerType::Pointer
 
using ImageSamplerType = ImageSamplerBase< FixedImageType >
 
using MovingImageDerivativeScalesType = FixedArray< double, Self::MovingImageDimension >
 
using MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType
 
using MovingImageLimiterType = LimiterFunctionBase< RealType, MovingImageDimension >
 
using MovingImageRegionType = typename MovingImageType::RegionType
 
using Pointer = SmartPointer< Self >
 
using Self = PCAMetric2
 
using Superclass = AdvancedImageToImageMetric< TFixedImage, TMovingImage >
 
- Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using AdvancedTransformType = AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >
 
using BSplineOrder1TransformPointer = typename BSplineOrder1TransformType::Pointer
 
using BSplineOrder1TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >
 
using BSplineOrder2TransformPointer = typename BSplineOrder2TransformType::Pointer
 
using BSplineOrder2TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >
 
using BSplineOrder3TransformPointer = typename BSplineOrder3TransformType::Pointer
 
using BSplineOrder3TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >
 
using CombinationTransformType = AdvancedCombinationTransform< ScalarType, FixedImageDimension >
 
using ConstPointer = SmartPointer< const Self >
 
using DerivativeValueType = typename DerivativeType::ValueType
 
using FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType
 
using FixedImageLimiterPointer = typename FixedImageLimiterType::Pointer
 
using FixedImageLimiterType = LimiterFunctionBase< RealType, FixedImageDimension >
 
using FixedImageMaskSpatialObject2Type = ImageMaskSpatialObject< Self::FixedImageDimension >
 
using FixedImagePixelType = typename FixedImageType::PixelType
 
using FixedImagePointer = typename FixedImageType::Pointer
 
using HessianType = vnl_sparse_matrix< HessianValueType >
 
using HessianValueType = typename DerivativeType::ValueType
 
using ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer
 
using ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType
 
using ImageSamplerPointer = typename ImageSamplerType::Pointer
 
using ImageSamplerType = ImageSamplerBase< FixedImageType >
 
using MovingImageDerivativeScalesType = FixedArray< double, Self::MovingImageDimension >
 
using MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType
 
using MovingImageLimiterPointer = typename MovingImageLimiterType::Pointer
 
using MovingImageLimiterType = LimiterFunctionBase< RealType, MovingImageDimension >
 
using MovingImageMaskSpatialObject2Type = ImageMaskSpatialObject< Self::MovingImageDimension >
 
using MovingImagePointer = typename MovingImageType::Pointer
 
using MovingImageRegionType = typename MovingImageType::RegionType
 
using NumberOfParametersType = typename AdvancedTransformType::NumberOfParametersType
 
using Pointer = SmartPointer< Self >
 
using ScalarType = typename TransformType::ScalarType
 
using Self = AdvancedImageToImageMetric
 
using Superclass = ImageToImageMetric< TFixedImage, TMovingImage >
 
using ThreaderType = itk::PlatformMultiThreader
 
using ThreadInfoType = typename ThreaderType::WorkUnitInfo
 

Public Member Functions

virtual const char * GetClassName () const
 
void GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const override
 
MeasureType GetValue (const TransformParametersType &parameters) const override
 
void GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
 
void Initialize () override
 
 ITK_DISALLOW_COPY_AND_MOVE (PCAMetric2)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SetGridSize (FixedImageSizeType _arg)
 
virtual void SetNumAdditionalSamplesFixed (unsigned int _arg)
 
virtual void SetReducedDimensionIndex (unsigned int _arg)
 
virtual void SetSubtractMean (bool _arg)
 
virtual void SetTransformIsStackTransform (bool _arg)
 
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
 
virtual const char * GetClassName () const
 
virtual const FixedImageLimiterTypeGetFixedImageLimiter ()
 
virtual double GetFixedLimitRangeRatio () const
 
virtual ImageSamplerTypeGetImageSampler () const
 
virtual const MovingImageDerivativeScalesTypeGetMovingImageDerivativeScales ()
 
virtual const MovingImageLimiterTypeGetMovingImageLimiter ()
 
virtual double GetMovingLimitRangeRatio () const
 
virtual double GetRequiredRatioOfValidSamples () const
 
virtual bool GetScaleGradientWithRespectToMovingImageOrientation () const
 
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
 
const AdvancedTransformTypeGetTransform () const override
 
virtual bool GetUseFixedImageLimiter () const
 
virtual bool GetUseImageSampler () const
 
virtual const boolGetUseMetricSingleThreaded ()
 
virtual bool GetUseMovingImageDerivativeScales () const
 
virtual bool GetUseMovingImageLimiter () const
 
virtual const boolGetUseMultiThread ()
 
void Initialize () override
 
 ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
 
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
 
virtual void SetFixedLimitRangeRatio (double _arg)
 
virtual void SetImageSampler (ImageSamplerType *_arg)
 
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
 
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
 
virtual void SetMovingLimitRangeRatio (double _arg)
 
virtual void SetNumberOfWorkUnits (ThreadIdType numberOfThreads)
 
virtual void SetRequiredRatioOfValidSamples (double _arg)
 
virtual void SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
 
virtual void SetTransform (AdvancedTransformType *arg)
 
virtual void SetUseMetricSingleThreaded (bool _arg)
 
virtual void SetUseMovingImageDerivativeScales (bool _arg)
 
virtual void SetUseMultiThread (bool _arg)
 
virtual void UseMetricSingleThreadedOff ()
 
virtual void UseMetricSingleThreadedOn ()
 
virtual void UseMultiThreadOff ()
 
virtual void UseMultiThreadOn ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Types

using BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >
 
using CentralDifferenceGradientFilterType = GradientImageFilter< MovingImageType, RealType, RealType >
 
using FixedImageContinuousIndexType = typename itk::ContinuousIndex< CoordinateRepresentationType, FixedImageDimension >
 
using FixedImageIndexType = typename FixedImageType::IndexType
 
using FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType
 
using FixedImagePointType = typename TransformType::InputPointType
 
using MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType
 
using MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType
 
using MovingImageIndexType = typename MovingImageType::IndexType
 
using MovingImagePointType = typename TransformType::OutputPointType
 
using NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType
 
- Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using BSplineInterpolatorFloatPointer = typename BSplineInterpolatorFloatType::Pointer
 
using BSplineInterpolatorFloatType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >
 
using BSplineInterpolatorPointer = typename BSplineInterpolatorType::Pointer
 
using BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >
 
using CentralDifferenceGradientFilterPointer = typename CentralDifferenceGradientFilterType::Pointer
 
using CentralDifferenceGradientFilterType = GradientImageFilter< MovingImageType, RealType, RealType >
 
using FixedImageIndexType = typename FixedImageType::IndexType
 
using FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType
 
using FixedImagePointType = typename TransformType::InputPointType
 
using LinearInterpolatorPointer = typename LinearInterpolatorType::Pointer
 
using LinearInterpolatorType = AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >
 
using MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType
 
using MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType
 
using MovingImageIndexType = typename MovingImageType::IndexType
 
using MovingImagePointType = typename TransformType::OutputPointType
 
using NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType
 
using ReducedBSplineInterpolatorPointer = typename ReducedBSplineInterpolatorType::Pointer
 
using ReducedBSplineInterpolatorType = ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >
 

Protected Member Functions

void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const override
 
 PCAMetric2 ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
 ~PCAMetric2 () override=default
 
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
 AdvancedImageToImageMetric ()
 
virtual void AfterThreadedGetValue (MeasureType &value) const
 
virtual void AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const
 
virtual void CheckForAdvancedTransform ()
 
virtual void CheckForBSplineInterpolator ()
 
virtual void CheckForBSplineTransform () const
 
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
 
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
 
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
 
virtual void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
 
bool FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const
 
virtual void InitializeImageSampler ()
 
virtual void InitializeLimiters ()
 
virtual void InitializeThreadingParameters () const
 
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
 
 itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
 
 itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)
 
 itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
 
 itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)
 
void LaunchGetValueAndDerivativeThreaderCallback () const
 
void LaunchGetValueThreaderCallback () const
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
virtual void SetUseFixedImageLimiter (bool _arg)
 
virtual void SetUseImageSampler (bool _arg)
 
virtual void SetUseMovingImageLimiter (bool _arg)
 
virtual void ThreadedGetValue (ThreadIdType threadID)
 
virtual void ThreadedGetValueAndDerivative (ThreadIdType threadID)
 
MovingImagePointType TransformPoint (const FixedImagePointType &fixedImagePoint) const
 
 ~AdvancedImageToImageMetric () override=default
 

Private Member Functions

void SampleRandom (const int n, const int m, std::vector< int > &numbers) const
 

Private Attributes

FixedImageSizeType m_GridSize
 
unsigned int m_NumAdditionalSamplesFixed
 
unsigned int m_ReducedDimensionIndex
 
bool m_SubtractMean { false }
 
bool m_TransformIsStackTransform { false }
 

Additional Inherited Members

- Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION AccumulateDerivativesThreaderCallback (void *arg)
 
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION GetValueAndDerivativeThreaderCallback (void *arg)
 
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION GetValueThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer m_AdvancedTransform { nullptr }
 
BSplineInterpolatorPointer m_BSplineInterpolator { nullptr }
 
BSplineInterpolatorFloatPointer m_BSplineInterpolatorFloat { nullptr }
 
CentralDifferenceGradientFilterPointer m_CentralDifferenceGradientFilter { nullptr }
 
FixedImageLimiterPointer m_FixedImageLimiter { nullptr }
 
FixedImageLimiterOutputType m_FixedImageMaxLimit { 1 }
 
FixedImageLimiterOutputType m_FixedImageMinLimit { 0 }
 
FixedImagePixelType m_FixedImageTrueMax { 1 }
 
FixedImagePixelType m_FixedImageTrueMin { 0 }
 
double m_FixedLimitRangeRatio { 0.01 }
 
std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]> m_GetValueAndDerivativePerThreadVariables
 
ThreadIdType m_GetValueAndDerivativePerThreadVariablesSize { 0 }
 
std::unique_ptr< AlignedGetValuePerThreadStruct[]> m_GetValuePerThreadVariables { nullptr }
 
ThreadIdType m_GetValuePerThreadVariablesSize { 0 }
 
ImageSamplerPointer m_ImageSampler { nullptr }
 
bool m_InterpolatorIsBSpline { false }
 
bool m_InterpolatorIsBSplineFloat { false }
 
bool m_InterpolatorIsLinear { false }
 
bool m_InterpolatorIsReducedBSpline { false }
 
LinearInterpolatorPointer m_LinearInterpolator { nullptr }
 
MovingImageLimiterPointer m_MovingImageLimiter { nullptr }
 
MovingImageLimiterOutputType m_MovingImageMaxLimit { 1 }
 
MovingImageLimiterOutputType m_MovingImageMinLimit { 0 }
 
MovingImagePixelType m_MovingImageTrueMax { 1 }
 
MovingImagePixelType m_MovingImageTrueMin { 0 }
 
double m_MovingLimitRangeRatio { 0.01 }
 
ReducedBSplineInterpolatorPointer m_ReducedBSplineInterpolator { nullptr }
 
MultiThreaderParameterType m_ThreaderMetricParameters
 
bool m_TransformIsAdvanced { false }
 
bool m_TransformIsBSpline { false }
 
bool m_UseMetricSingleThreaded { true }
 
bool m_UseMultiThread { false }
 
bool m_UseOpenMP
 

Member Typedef Documentation

◆ BSplineInterpolatorType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::BSplineInterpolatorType = BSplineInterpolateImageFunction<MovingImageType, CoordinateRepresentationType, double>
protected

Typedefs used for computing image derivatives.

Definition at line 321 of file itkAdvancedImageToImageMetric.h.

◆ CentralDifferenceGradientFilterType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::CentralDifferenceGradientFilterType = GradientImageFilter<MovingImageType, RealType, RealType>
protected

Definition at line 333 of file itkAdvancedImageToImageMetric.h.

◆ ConstPointer

template<class TFixedImage , class TMovingImage >
using itk::PCAMetric2< TFixedImage, TMovingImage >::ConstPointer = SmartPointer<const Self>

Definition at line 40 of file itkPCAMetric2.h.

◆ FixedImageContinuousIndexType

template<class TFixedImage , class TMovingImage >
using itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageContinuousIndexType = typename itk::ContinuousIndex<CoordinateRepresentationType, FixedImageDimension>
protected

Definition at line 138 of file itkPCAMetric2.h.

◆ FixedImageIndexType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexType = typename FixedImageType::IndexType
protected

Protected Typedefs Typedefs for indices and points.

Definition at line 313 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageIndexValueType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType
protected

Definition at line 314 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageLimiterOutputType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType

Definition at line 151 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageLimiterType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterType = LimiterFunctionBase<RealType, FixedImageDimension>

Typedefs for Limiter support.

Definition at line 149 of file itkAdvancedImageToImageMetric.h.

◆ FixedImagePixelType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType = typename FixedImageType::PixelType

Some useful extra typedefs.

Definition at line 138 of file itkAdvancedImageToImageMetric.h.

◆ FixedImagePointType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType = typename TransformType::InputPointType
protected

Definition at line 316 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageSizeType

template<class TFixedImage , class TMovingImage >
using itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageSizeType = typename FixedImageRegionType::SizeType

Definition at line 43 of file itkPCAMetric2.h.

◆ ImageSampleContainerPointer

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer

Definition at line 146 of file itkAdvancedImageToImageMetric.h.

◆ ImageSampleContainerType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType

Definition at line 145 of file itkAdvancedImageToImageMetric.h.

◆ ImageSamplerPointer

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerPointer = typename ImageSamplerType::Pointer

Definition at line 144 of file itkAdvancedImageToImageMetric.h.

◆ ImageSamplerType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerType = ImageSamplerBase<FixedImageType>

Typedefs for the ImageSampler.

Definition at line 143 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageContinuousIndexType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType
protected

Definition at line 318 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageDerivativeScalesType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeScalesType = FixedArray<double, Self::MovingImageDimension>

Definition at line 140 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageDerivativeType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType
protected

Definition at line 332 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageIndexType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageIndexType = typename MovingImageType::IndexType
protected

Definition at line 315 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageLimiterOutputType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType

Definition at line 154 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageLimiterType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterType = LimiterFunctionBase<RealType, MovingImageDimension>

Definition at line 152 of file itkAdvancedImageToImageMetric.h.

◆ MovingImagePointType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType = typename TransformType::OutputPointType
protected

Definition at line 317 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageRegionType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageRegionType = typename MovingImageType::RegionType

Definition at line 139 of file itkAdvancedImageToImageMetric.h.

◆ NonZeroJacobianIndicesType

template<class TFixedImage , class TMovingImage >
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType
protected

Typedefs for support of sparse Jacobians and compact support of transformations.

Definition at line 337 of file itkAdvancedImageToImageMetric.h.

◆ Pointer

template<class TFixedImage , class TMovingImage >
using itk::PCAMetric2< TFixedImage, TMovingImage >::Pointer = SmartPointer<Self>

Definition at line 39 of file itkPCAMetric2.h.

◆ Self

template<class TFixedImage , class TMovingImage >
using itk::PCAMetric2< TFixedImage, TMovingImage >::Self = PCAMetric2

Standard class typedefs.

Definition at line 37 of file itkPCAMetric2.h.

◆ Superclass

template<class TFixedImage , class TMovingImage >
using itk::PCAMetric2< TFixedImage, TMovingImage >::Superclass = AdvancedImageToImageMetric<TFixedImage, TMovingImage>

Definition at line 38 of file itkPCAMetric2.h.

Constructor & Destructor Documentation

◆ PCAMetric2()

template<class TFixedImage , class TMovingImage >
itk::PCAMetric2< TFixedImage, TMovingImage >::PCAMetric2 ( )
protected

◆ ~PCAMetric2()

template<class TFixedImage , class TMovingImage >
itk::PCAMetric2< TFixedImage, TMovingImage >::~PCAMetric2 ( )
overrideprotecteddefault

Member Function Documentation

◆ EvaluateTransformJacobianInnerProduct()

template<class TFixedImage , class TMovingImage >
void itk::PCAMetric2< TFixedImage, TMovingImage >::EvaluateTransformJacobianInnerProduct ( const TransformJacobianType &  jacobian,
const MovingImageDerivativeType movingImageDerivative,
DerivativeType &  imageJacobian 
) const
overrideprotectedvirtual

Computes the innerproduct of transform Jacobian with moving image gradient. The results are stored in imageJacobian, which is supposed to have the right size (same length as Jacobian's number of columns).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

◆ GetClassName()

template<class TFixedImage , class TMovingImage >
virtual const char * itk::PCAMetric2< TFixedImage, TMovingImage >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in elastix::PCAMetric2< TElastix >.

◆ GetDerivative()

template<class TFixedImage , class TMovingImage >
void itk::PCAMetric2< TFixedImage, TMovingImage >::GetDerivative ( const TransformParametersType &  parameters,
DerivativeType &  derivative 
) const
override

Get the derivatives of the match measure.

◆ GetValue()

template<class TFixedImage , class TMovingImage >
MeasureType itk::PCAMetric2< TFixedImage, TMovingImage >::GetValue ( const TransformParametersType &  parameters) const
override

Get the value for single valued optimizers.

◆ GetValueAndDerivative()

template<class TFixedImage , class TMovingImage >
void itk::PCAMetric2< TFixedImage, TMovingImage >::GetValueAndDerivative ( const TransformParametersType &  parameters,
MeasureType &  Value,
DerivativeType &  Derivative 
) const
override

Get value and derivatives for multiple valued optimizers.

◆ Initialize()

template<class TFixedImage , class TMovingImage >
void itk::PCAMetric2< TFixedImage, TMovingImage >::Initialize ( )
override

Initialize the Metric by making sure that all the components are present and plugged together correctly.

  • Call the superclass' implementation.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TFixedImage , class TMovingImage >
itk::PCAMetric2< TFixedImage, TMovingImage >::ITK_DISALLOW_COPY_AND_MOVE ( PCAMetric2< TFixedImage, TMovingImage >  )

◆ itkStaticConstMacro() [1/2]

template<class TFixedImage , class TMovingImage >
itk::PCAMetric2< TFixedImage, TMovingImage >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned int  ,
FixedImageType::ImageDimension   
)

The fixed image dimension.

◆ itkStaticConstMacro() [2/2]

template<class TFixedImage , class TMovingImage >
itk::PCAMetric2< TFixedImage, TMovingImage >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned int  ,
MovingImageType::ImageDimension   
)

The moving image dimension.

◆ New()

template<class TFixedImage , class TMovingImage >
static Pointer itk::PCAMetric2< TFixedImage, TMovingImage >::New ( )
static

Method for creation through the object factory.

◆ PrintSelf()

template<class TFixedImage , class TMovingImage >
void itk::PCAMetric2< TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotected

◆ SampleRandom()

template<class TFixedImage , class TMovingImage >
void itk::PCAMetric2< TFixedImage, TMovingImage >::SampleRandom ( const int  n,
const int  m,
std::vector< int > &  numbers 
) const
private

Sample n random numbers from 0..m and add them to the vector.

◆ SetGridSize()

template<class TFixedImage , class TMovingImage >
virtual void itk::PCAMetric2< TFixedImage, TMovingImage >::SetGridSize ( FixedImageSizeType  _arg)
virtual

◆ SetNumAdditionalSamplesFixed()

template<class TFixedImage , class TMovingImage >
virtual void itk::PCAMetric2< TFixedImage, TMovingImage >::SetNumAdditionalSamplesFixed ( unsigned int  _arg)
virtual

Set functions.

◆ SetReducedDimensionIndex()

template<class TFixedImage , class TMovingImage >
virtual void itk::PCAMetric2< TFixedImage, TMovingImage >::SetReducedDimensionIndex ( unsigned int  _arg)
virtual

◆ SetSubtractMean()

template<class TFixedImage , class TMovingImage >
virtual void itk::PCAMetric2< TFixedImage, TMovingImage >::SetSubtractMean ( bool  _arg)
virtual

◆ SetTransformIsStackTransform()

template<class TFixedImage , class TMovingImage >
virtual void itk::PCAMetric2< TFixedImage, TMovingImage >::SetTransformIsStackTransform ( bool  _arg)
virtual

Field Documentation

◆ m_GridSize

template<class TFixedImage , class TMovingImage >
FixedImageSizeType itk::PCAMetric2< TFixedImage, TMovingImage >::m_GridSize
private

GridSize of B-spline transform.

Definition at line 169 of file itkPCAMetric2.h.

◆ m_NumAdditionalSamplesFixed

template<class TFixedImage , class TMovingImage >
unsigned int itk::PCAMetric2< TFixedImage, TMovingImage >::m_NumAdditionalSamplesFixed
private

Variables to control random sampling in last dimension.

Definition at line 162 of file itkPCAMetric2.h.

◆ m_ReducedDimensionIndex

template<class TFixedImage , class TMovingImage >
unsigned int itk::PCAMetric2< TFixedImage, TMovingImage >::m_ReducedDimensionIndex
private

Definition at line 163 of file itkPCAMetric2.h.

◆ m_SubtractMean

template<class TFixedImage , class TMovingImage >
bool itk::PCAMetric2< TFixedImage, TMovingImage >::m_SubtractMean { false }
private

Bool to determine if we want to subtract the mean derivate from the derivative elements.

Definition at line 166 of file itkPCAMetric2.h.

◆ m_TransformIsStackTransform

template<class TFixedImage , class TMovingImage >
bool itk::PCAMetric2< TFixedImage, TMovingImage >::m_TransformIsStackTransform { false }
private

Bool to indicate if the transform used is a stacktransform. Set by elx files.

Definition at line 172 of file itkPCAMetric2.h.



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