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itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet > Class Template Reference

#include <itkStatisticalShapePointPenalty.h>

Detailed Description

template<class TFixedPointSet, class TMovingPointSet>
class itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >

Computes the Mahalanobis distance between the transformed shape and a mean shape. A model mean and covariance are required.

Author
F.F. Berendsen, Image Sciences Institute, UMC Utrecht, The Netherlands
Note
This work was funded by the projects Care4Me and Mediate.
If you use the StatisticalShapePenalty anywhere we would appreciate if you cite the following article:
F.F. Berendsen et al., Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR, Comput. Vis. Image Understand. (2013), http://dx.doi.org/10.1016/j.cviu.2012.12.006

Definition at line 56 of file itkStatisticalShapePointPenalty.h.

Inheritance diagram for itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >:
Inheritance graph
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Public Types

using ConstPointer = SmartPointer< const Self >
 
using CoordRepType = typename OutputPointType::CoordRepType
 
using DerivativeValueType = typename DerivativeType::ValueType
 
using FixedPointSetConstPointer = typename FixedPointSetType::ConstPointer
 
using FixedPointSetType = TFixedPointSet
 
using InputPointType = typename TransformType::InputPointType
 
using MovingPointSetConstPointer = typename MovingPointSetType::ConstPointer
 
using MovingPointSetType = TMovingPointSet
 
using NonZeroJacobianIndicesType = typename TransformType::NonZeroJacobianIndicesType
 
using OutputPointType = typename TransformType::OutputPointType
 
using PCACovarianceType = vnl_svd_economy< CoordRepType >
 
using PointDataIterator = typename FixedPointSetType::PointDataContainer::ConstIterator
 
using Pointer = SmartPointer< Self >
 
using PointIterator = typename FixedPointSetType::PointsContainer::ConstIterator
 
using ProposalDerivativeType = typename std::vector< VnlVectorType * >
 
using Self = StatisticalShapePointPenalty
 
using Superclass = SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
 
using TransformJacobianType = typename TransformType::JacobianType
 
using TransformParametersType = typename TransformType::ParametersType
 
using TransformPointer = typename TransformType::Pointer
 
using TransformType = AdvancedTransform< CoordinateRepresentationType, Self::FixedPointSetDimension, Self::MovingPointSetDimension >
 
using VnlMatrixType = vnl_matrix< CoordRepType >
 
using VnlVectorType = vnl_vector< CoordRepType >
 
- Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
using ConstPointer = SmartPointer< const Self >
 
using CoordinateRepresentationType = Superclass::ParametersValueType
 
using DerivativeValueType = typename DerivativeType::ValueType
 
using FixedImageMaskConstPointer = typename FixedImageMaskType::ConstPointer
 
using FixedImageMaskPointer = typename FixedImageMaskType::Pointer
 
using FixedImageMaskType = SpatialObject< Self::FixedPointSetDimension >
 
using FixedPointSetConstPointer = typename FixedPointSetType::ConstPointer
 
using FixedPointSetPixelType = typename FixedPointSetType::PixelType
 
using FixedPointSetType = TFixedPointSet
 
using InputPointType = typename TransformType::InputPointType
 
using MovingImageMaskConstPointer = typename MovingImageMaskType::ConstPointer
 
using MovingImageMaskPointer = typename MovingImageMaskType::Pointer
 
using MovingImageMaskType = SpatialObject< Self::MovingPointSetDimension >
 
using MovingPointSetConstPointer = typename MovingPointSetType::ConstPointer
 
using MovingPointSetPixelType = typename MovingPointSetType::PixelType
 
using MovingPointSetType = TMovingPointSet
 
using NonZeroJacobianIndicesType = typename TransformType::NonZeroJacobianIndicesType
 
using OutputPointType = typename TransformType::OutputPointType
 
using PointDataIterator = typename FixedPointSetType::PointDataContainer::ConstIterator
 
using Pointer = SmartPointer< Self >
 
using PointIterator = typename FixedPointSetType::PointsContainer::ConstIterator
 
using Self = SingleValuedPointSetToPointSetMetric
 
using Superclass = SingleValuedCostFunction
 
using TransformJacobianType = typename TransformType::JacobianType
 
using TransformParametersType = typename TransformType::ParametersType
 
using TransformPointer = typename TransformType::Pointer
 
using TransformType = AdvancedTransform< CoordinateRepresentationType, Self::FixedPointSetDimension, Self::MovingPointSetDimension >
 

Public Member Functions

virtual void BaseVarianceNeedsUpdateOff ()
 
virtual void BaseVarianceNeedsUpdateOn ()
 
virtual MeasureType GetBaseVariance () const
 
virtual MeasureType GetCentroidXVariance () const
 
virtual MeasureType GetCentroidYVariance () const
 
virtual MeasureType GetCentroidZVariance () const
 
virtual const char * GetClassName () const
 
virtual MeasureType GetCutOffSharpness () const
 
virtual MeasureType GetCutOffValue () const
 
void GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const override
 
virtual const boolGetNormalizedShapeModel ()
 
virtual const intGetShapeModelCalculation ()
 
virtual MeasureType GetShrinkageIntensity () const
 
virtual MeasureType GetSizeVariance () const
 
MeasureType GetValue (const TransformParametersType &parameters) const override
 
void GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
 
void Initialize () override
 
 ITK_DISALLOW_COPY_AND_MOVE (StatisticalShapePointPenalty)
 
virtual void NormalizedShapeModelOff ()
 
virtual void NormalizedShapeModelOn ()
 
virtual void SetBaseVariance (MeasureType _arg)
 
virtual void SetBaseVarianceNeedsUpdate (bool _arg)
 
virtual void SetCentroidXVariance (MeasureType _arg)
 
virtual void SetCentroidYVariance (MeasureType _arg)
 
virtual void SetCentroidZVariance (MeasureType _arg)
 
virtual void SetCovarianceMatrix (const vnl_matrix< double > *_arg)
 
virtual void SetCutOffSharpness (MeasureType _arg)
 
virtual void SetCutOffValue (MeasureType _arg)
 
virtual void SetEigenValues (const vnl_vector< double > *_arg)
 
virtual void SetEigenVectors (const vnl_matrix< double > *_arg)
 
virtual void SetMeanVector (const vnl_vector< double > *_arg)
 
virtual void SetNormalizedShapeModel (bool _arg)
 
virtual void SetShapeModelCalculation (int _arg)
 
virtual void SetShrinkageIntensity (MeasureType _arg)
 
virtual void SetShrinkageIntensityNeedsUpdate (bool _arg)
 
virtual void SetSizeVariance (MeasureType _arg)
 
virtual void SetVariancesNeedsUpdate (bool _arg)
 
virtual void ShrinkageIntensityNeedsUpdateOff ()
 
virtual void ShrinkageIntensityNeedsUpdateOn ()
 
virtual void VariancesNeedsUpdateOff ()
 
virtual void VariancesNeedsUpdateOn ()
 
- Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
virtual void BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
 
virtual const char * GetClassName () const
 
virtual const FixedImageMaskTypeGetFixedImageMask ()
 
virtual const FixedPointSetTypeGetFixedPointSet ()
 
virtual const MovingImageMaskTypeGetMovingImageMask ()
 
virtual const MovingPointSetTypeGetMovingPointSet ()
 
unsigned int GetNumberOfParameters () const override
 
virtual const TransformTypeGetTransform ()
 
virtual const boolGetUseMetricSingleThreaded ()
 
virtual void Initialize ()
 
 ITK_DISALLOW_COPY_AND_MOVE (SingleValuedPointSetToPointSetMetric)
 
 itkStaticConstMacro (FixedPointSetDimension, unsigned int, TFixedPointSet::PointDimension)
 
 itkStaticConstMacro (MovingPointSetDimension, unsigned int, TMovingPointSet::PointDimension)
 
virtual void SetFixedImageMask (const FixedImageMaskType *_arg)
 
virtual void SetFixedPointSet (const FixedPointSetType *_arg)
 
virtual void SetMovingImageMask (const MovingImageMaskType *_arg)
 
virtual void SetMovingPointSet (const MovingPointSetType *_arg)
 
virtual void SetTransform (TransformType *_arg)
 
void SetTransformParameters (const ParametersType &parameters) const
 
virtual void SetUseMetricSingleThreaded (bool _arg)
 
virtual void UseMetricSingleThreadedOff ()
 
virtual void UseMetricSingleThreadedOn ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

void PrintSelf (std::ostream &os, Indent indent) const override
 
 StatisticalShapePointPenalty ()
 
 ~StatisticalShapePointPenalty () override
 
- Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
void PrintSelf (std::ostream &os, Indent indent) const override
 
 SingleValuedPointSetToPointSetMetric ()=default
 
 ~SingleValuedPointSetToPointSetMetric () override=default
 

Private Member Functions

void CalculateCutOffDerivative (typename DerivativeType::element_type &derivativeElement, const MeasureType &value) const
 
void CalculateCutOffValue (MeasureType &value) const
 
void CalculateDerivative (DerivativeType &derivative, const MeasureType &value, const VnlVectorType &differenceVector, const VnlVectorType &centerrotated, const VnlVectorType &eigrot, const unsigned int shapeLength) const
 
void CalculateValue (MeasureType &value, VnlVectorType &differenceVector, VnlVectorType &centerrotated, VnlVectorType &eigrot) const
 
void FillProposalDerivative (const OutputPointType &fixedPoint, const unsigned int vertexindex) const
 
void FillProposalVector (const OutputPointType &fixedPoint, const unsigned int vertexindex) const
 
void NormalizeProposalVector (const unsigned int shapeLength) const
 
void UpdateCentroidAndAlignProposalDerivative (const unsigned int shapeLength) const
 
void UpdateCentroidAndAlignProposalVector (const unsigned int shapeLength) const
 
void UpdateL2 (const unsigned int shapeLength) const
 
void UpdateL2AndNormalizeProposalDerivative (const unsigned int shapeLength) const
 

Private Attributes

double m_BaseStd
 
double m_BaseVariance
 
bool m_BaseVarianceNeedsUpdate
 
double m_CentroidXStd
 
double m_CentroidXVariance
 
double m_CentroidYStd
 
double m_CentroidYVariance
 
double m_CentroidZStd
 
double m_CentroidZVariance
 
const VnlMatrixTypem_CovarianceMatrix
 
double m_CutOffSharpness
 
double m_CutOffValue
 
const VnlVectorTypem_EigenValues
 
VnlVectorTypem_EigenValuesRegularized
 
const VnlMatrixTypem_EigenVectors
 
VnlMatrixTypem_InverseCovarianceMatrix
 
VnlVectorType m_MeanValues
 
const VnlVectorTypem_MeanVector
 
bool m_NormalizedShapeModel
 
ProposalDerivativeTypem_ProposalDerivative
 
unsigned int m_ProposalLength
 
VnlVectorType m_ProposalVector
 
int m_ShapeModelCalculation
 
double m_ShrinkageIntensity
 
bool m_ShrinkageIntensityNeedsUpdate
 
double m_SizeStd
 
double m_SizeVariance
 
bool m_VariancesNeedsUpdate
 

Additional Inherited Members

- Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
FixedImageMaskConstPointer m_FixedImageMask { nullptr }
 
FixedPointSetConstPointer m_FixedPointSet { nullptr }
 
MovingImageMaskConstPointer m_MovingImageMask { nullptr }
 
MovingPointSetConstPointer m_MovingPointSet { nullptr }
 
unsigned int m_NumberOfPointsCounted { 0 }
 
TransformPointer m_Transform { nullptr }
 
bool m_UseMetricSingleThreaded { true }
 

Member Typedef Documentation

◆ ConstPointer

template<class TFixedPointSet , class TMovingPointSet >
using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ConstPointer = SmartPointer<const Self>

Definition at line 66 of file itkStatisticalShapePointPenalty.h.

◆ CoordRepType

template<class TFixedPointSet , class TMovingPointSet >
using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CoordRepType = typename OutputPointType::CoordRepType

Definition at line 95 of file itkStatisticalShapePointPenalty.h.

◆ DerivativeValueType

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::DerivativeValueType = typename DerivativeType::ValueType

Definition at line 111 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ FixedPointSetConstPointer

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::FixedPointSetConstPointer = typename FixedPointSetType::ConstPointer

Definition at line 81 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ FixedPointSetType

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::FixedPointSetType = TFixedPointSet

Typedefs.

Definition at line 79 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ InputPointType

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::InputPointType = typename TransformType::InputPointType

Definition at line 96 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ MovingPointSetConstPointer

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::MovingPointSetConstPointer = typename MovingPointSetType::ConstPointer

Definition at line 84 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ MovingPointSetType

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::MovingPointSetType = TMovingPointSet

Definition at line 82 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ NonZeroJacobianIndicesType

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::NonZeroJacobianIndicesType = typename TransformType::NonZeroJacobianIndicesType

Typedefs for support of sparse Jacobians and compact support of transformations.

Definition at line 115 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ OutputPointType

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::OutputPointType = typename TransformType::OutputPointType

Definition at line 97 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ PCACovarianceType

template<class TFixedPointSet , class TMovingPointSet >
using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PCACovarianceType = vnl_svd_economy<CoordRepType>

Definition at line 101 of file itkStatisticalShapePointPenalty.h.

◆ PointDataIterator

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::PointDataIterator = typename FixedPointSetType::PointDataContainer::ConstIterator

Definition at line 86 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ Pointer

template<class TFixedPointSet , class TMovingPointSet >
using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Pointer = SmartPointer<Self>

Definition at line 65 of file itkStatisticalShapePointPenalty.h.

◆ PointIterator

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::PointIterator = typename FixedPointSetType::PointsContainer::ConstIterator

Definition at line 85 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ ProposalDerivativeType

template<class TFixedPointSet , class TMovingPointSet >
using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ProposalDerivativeType = typename std::vector<VnlVectorType *>

Definition at line 99 of file itkStatisticalShapePointPenalty.h.

◆ Self

template<class TFixedPointSet , class TMovingPointSet >
using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Self = StatisticalShapePointPenalty

Standard class typedefs.

Definition at line 63 of file itkStatisticalShapePointPenalty.h.

◆ Superclass

template<class TFixedPointSet , class TMovingPointSet >
using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Superclass = SingleValuedPointSetToPointSetMetric<TFixedPointSet, TMovingPointSet>

Definition at line 64 of file itkStatisticalShapePointPenalty.h.

◆ TransformJacobianType

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::TransformJacobianType = typename TransformType::JacobianType

Definition at line 99 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ TransformParametersType

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::TransformParametersType = typename TransformType::ParametersType

Definition at line 98 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ TransformPointer

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::TransformPointer = typename TransformType::Pointer

Definition at line 95 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ TransformType

template<class TFixedPointSet , class TMovingPointSet >
using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::TransformType = AdvancedTransform<CoordinateRepresentationType, Self::FixedPointSetDimension, Self::MovingPointSetDimension>

More typedefs.

Definition at line 93 of file itkSingleValuedPointSetToPointSetMetric.h.

◆ VnlMatrixType

template<class TFixedPointSet , class TMovingPointSet >
using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VnlMatrixType = vnl_matrix<CoordRepType>

Definition at line 97 of file itkStatisticalShapePointPenalty.h.

◆ VnlVectorType

template<class TFixedPointSet , class TMovingPointSet >
using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VnlVectorType = vnl_vector<CoordRepType>

Definition at line 96 of file itkStatisticalShapePointPenalty.h.

Constructor & Destructor Documentation

◆ StatisticalShapePointPenalty()

template<class TFixedPointSet , class TMovingPointSet >
itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::StatisticalShapePointPenalty ( )
protected

◆ ~StatisticalShapePointPenalty()

template<class TFixedPointSet , class TMovingPointSet >
itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::~StatisticalShapePointPenalty ( )
overrideprotected

Member Function Documentation

◆ BaseVarianceNeedsUpdateOff()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::BaseVarianceNeedsUpdateOff ( )
virtual

◆ BaseVarianceNeedsUpdateOn()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::BaseVarianceNeedsUpdateOn ( )
virtual

◆ CalculateCutOffDerivative()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateCutOffDerivative ( typename DerivativeType::element_type &  derivativeElement,
const MeasureType &  value 
) const
private

◆ CalculateCutOffValue()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateCutOffValue ( MeasureType &  value) const
private

◆ CalculateDerivative()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateDerivative ( DerivativeType &  derivative,
const MeasureType &  value,
const VnlVectorType differenceVector,
const VnlVectorType centerrotated,
const VnlVectorType eigrot,
const unsigned int  shapeLength 
) const
private

◆ CalculateValue()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateValue ( MeasureType &  value,
VnlVectorType differenceVector,
VnlVectorType centerrotated,
VnlVectorType eigrot 
) const
private

◆ FillProposalDerivative()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FillProposalDerivative ( const OutputPointType fixedPoint,
const unsigned int  vertexindex 
) const
private

◆ FillProposalVector()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FillProposalVector ( const OutputPointType fixedPoint,
const unsigned int  vertexindex 
) const
private

◆ GetBaseVariance()

template<class TFixedPointSet , class TMovingPointSet >
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetBaseVariance ( ) const
virtual

◆ GetCentroidXVariance()

template<class TFixedPointSet , class TMovingPointSet >
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidXVariance ( ) const
virtual

◆ GetCentroidYVariance()

template<class TFixedPointSet , class TMovingPointSet >
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidYVariance ( ) const
virtual

◆ GetCentroidZVariance()

template<class TFixedPointSet , class TMovingPointSet >
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidZVariance ( ) const
virtual

◆ GetClassName()

template<class TFixedPointSet , class TMovingPointSet >
virtual const char * itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >.

Reimplemented in elastix::StatisticalShapePenalty< TElastix >.

◆ GetCutOffSharpness()

template<class TFixedPointSet , class TMovingPointSet >
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCutOffSharpness ( ) const
virtual

◆ GetCutOffValue()

template<class TFixedPointSet , class TMovingPointSet >
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCutOffValue ( ) const
virtual

◆ GetDerivative()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetDerivative ( const TransformParametersType parameters,
DerivativeType &  Derivative 
) const
override

Get the derivatives of the match measure.

◆ GetNormalizedShapeModel()

template<class TFixedPointSet , class TMovingPointSet >
virtual const bool & itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetNormalizedShapeModel ( )
virtual

◆ GetShapeModelCalculation()

template<class TFixedPointSet , class TMovingPointSet >
virtual const int & itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetShapeModelCalculation ( )
virtual

◆ GetShrinkageIntensity()

template<class TFixedPointSet , class TMovingPointSet >
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetShrinkageIntensity ( ) const
virtual

◆ GetSizeVariance()

template<class TFixedPointSet , class TMovingPointSet >
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetSizeVariance ( ) const
virtual

◆ GetValue()

template<class TFixedPointSet , class TMovingPointSet >
MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetValue ( const TransformParametersType parameters) const
override

Get the value for single valued optimizers.

◆ GetValueAndDerivative()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetValueAndDerivative ( const TransformParametersType parameters,
MeasureType &  Value,
DerivativeType &  Derivative 
) const
override

Get value and derivatives for multiple valued optimizers.

◆ Initialize()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Initialize ( )
overridevirtual

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TFixedPointSet , class TMovingPointSet >
itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ITK_DISALLOW_COPY_AND_MOVE ( StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >  )

◆ New()

template<class TFixedPointSet , class TMovingPointSet >
static Pointer itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::New ( )
static

Method for creation through the object factory.

◆ NormalizedShapeModelOff()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizedShapeModelOff ( )
virtual

◆ NormalizedShapeModelOn()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizedShapeModelOn ( )
virtual

◆ NormalizeProposalVector()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizeProposalVector ( const unsigned int  shapeLength) const
private

◆ PrintSelf()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotected

PrintSelf.

◆ SetBaseVariance()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetBaseVariance ( MeasureType  _arg)
virtual

Set/Get the BaseVariance parameter.

◆ SetBaseVarianceNeedsUpdate()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetBaseVarianceNeedsUpdate ( bool  _arg)
virtual

◆ SetCentroidXVariance()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidXVariance ( MeasureType  _arg)
virtual

◆ SetCentroidYVariance()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidYVariance ( MeasureType  _arg)
virtual

◆ SetCentroidZVariance()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidZVariance ( MeasureType  _arg)
virtual

◆ SetCovarianceMatrix()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCovarianceMatrix ( const vnl_matrix< double > *  _arg)
virtual

◆ SetCutOffSharpness()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCutOffSharpness ( MeasureType  _arg)
virtual

◆ SetCutOffValue()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCutOffValue ( MeasureType  _arg)
virtual

◆ SetEigenValues()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetEigenValues ( const vnl_vector< double > *  _arg)
virtual

◆ SetEigenVectors()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetEigenVectors ( const vnl_matrix< double > *  _arg)
virtual

◆ SetMeanVector()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetMeanVector ( const vnl_vector< double > *  _arg)
virtual

◆ SetNormalizedShapeModel()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetNormalizedShapeModel ( bool  _arg)
virtual

◆ SetShapeModelCalculation()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShapeModelCalculation ( int  _arg)
virtual

◆ SetShrinkageIntensity()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShrinkageIntensity ( MeasureType  _arg)
virtual

Set/Get the shrinkageIntensity parameter.

◆ SetShrinkageIntensityNeedsUpdate()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShrinkageIntensityNeedsUpdate ( bool  _arg)
virtual

◆ SetSizeVariance()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetSizeVariance ( MeasureType  _arg)
virtual

◆ SetVariancesNeedsUpdate()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetVariancesNeedsUpdate ( bool  _arg)
virtual

◆ ShrinkageIntensityNeedsUpdateOff()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ShrinkageIntensityNeedsUpdateOff ( )
virtual

◆ ShrinkageIntensityNeedsUpdateOn()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ShrinkageIntensityNeedsUpdateOn ( )
virtual

◆ UpdateCentroidAndAlignProposalDerivative()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateCentroidAndAlignProposalDerivative ( const unsigned int  shapeLength) const
private

◆ UpdateCentroidAndAlignProposalVector()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateCentroidAndAlignProposalVector ( const unsigned int  shapeLength) const
private

◆ UpdateL2()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateL2 ( const unsigned int  shapeLength) const
private

◆ UpdateL2AndNormalizeProposalDerivative()

template<class TFixedPointSet , class TMovingPointSet >
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateL2AndNormalizeProposalDerivative ( const unsigned int  shapeLength) const
private

◆ VariancesNeedsUpdateOff()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VariancesNeedsUpdateOff ( )
virtual

◆ VariancesNeedsUpdateOn()

template<class TFixedPointSet , class TMovingPointSet >
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VariancesNeedsUpdateOn ( )
virtual

Field Documentation

◆ m_BaseStd

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseStd
private

Definition at line 250 of file itkStatisticalShapePointPenalty.h.

◆ m_BaseVariance

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseVariance
private

Definition at line 249 of file itkStatisticalShapePointPenalty.h.

◆ m_BaseVarianceNeedsUpdate

template<class TFixedPointSet , class TMovingPointSet >
bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseVarianceNeedsUpdate
private

Definition at line 239 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidXStd

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidXStd
private

Definition at line 230 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidXVariance

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidXVariance
private

Definition at line 229 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidYStd

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidYStd
private

Definition at line 232 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidYVariance

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidYVariance
private

Definition at line 231 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidZStd

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidZStd
private

Definition at line 234 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidZVariance

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidZVariance
private

Definition at line 233 of file itkStatisticalShapePointPenalty.h.

◆ m_CovarianceMatrix

template<class TFixedPointSet , class TMovingPointSet >
const VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CovarianceMatrix
private

Definition at line 223 of file itkStatisticalShapePointPenalty.h.

◆ m_CutOffSharpness

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CutOffSharpness
private

Definition at line 255 of file itkStatisticalShapePointPenalty.h.

◆ m_CutOffValue

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CutOffValue
private

Definition at line 254 of file itkStatisticalShapePointPenalty.h.

◆ m_EigenValues

template<class TFixedPointSet , class TMovingPointSet >
const VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenValues
private

Definition at line 225 of file itkStatisticalShapePointPenalty.h.

◆ m_EigenValuesRegularized

template<class TFixedPointSet , class TMovingPointSet >
VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenValuesRegularized
private

Definition at line 242 of file itkStatisticalShapePointPenalty.h.

◆ m_EigenVectors

template<class TFixedPointSet , class TMovingPointSet >
const VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenVectors
private

Definition at line 224 of file itkStatisticalShapePointPenalty.h.

◆ m_InverseCovarianceMatrix

template<class TFixedPointSet , class TMovingPointSet >
VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_InverseCovarianceMatrix
private

Definition at line 227 of file itkStatisticalShapePointPenalty.h.

◆ m_MeanValues

template<class TFixedPointSet , class TMovingPointSet >
VnlVectorType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_MeanValues
mutableprivate

Definition at line 252 of file itkStatisticalShapePointPenalty.h.

◆ m_MeanVector

template<class TFixedPointSet , class TMovingPointSet >
const VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_MeanVector
private

Definition at line 222 of file itkStatisticalShapePointPenalty.h.

◆ m_NormalizedShapeModel

template<class TFixedPointSet , class TMovingPointSet >
bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_NormalizedShapeModel
private

Definition at line 246 of file itkStatisticalShapePointPenalty.h.

◆ m_ProposalDerivative

template<class TFixedPointSet , class TMovingPointSet >
ProposalDerivativeType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalDerivative
mutableprivate

Definition at line 244 of file itkStatisticalShapePointPenalty.h.

◆ m_ProposalLength

template<class TFixedPointSet , class TMovingPointSet >
unsigned int itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalLength
private

Definition at line 245 of file itkStatisticalShapePointPenalty.h.

◆ m_ProposalVector

template<class TFixedPointSet , class TMovingPointSet >
VnlVectorType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalVector
mutableprivate

Definition at line 251 of file itkStatisticalShapePointPenalty.h.

◆ m_ShapeModelCalculation

template<class TFixedPointSet , class TMovingPointSet >
int itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShapeModelCalculation
private

Definition at line 247 of file itkStatisticalShapePointPenalty.h.

◆ m_ShrinkageIntensity

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShrinkageIntensity
private

Definition at line 248 of file itkStatisticalShapePointPenalty.h.

◆ m_ShrinkageIntensityNeedsUpdate

template<class TFixedPointSet , class TMovingPointSet >
bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShrinkageIntensityNeedsUpdate
private

Definition at line 238 of file itkStatisticalShapePointPenalty.h.

◆ m_SizeStd

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_SizeStd
private

Definition at line 236 of file itkStatisticalShapePointPenalty.h.

◆ m_SizeVariance

template<class TFixedPointSet , class TMovingPointSet >
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_SizeVariance
private

Definition at line 235 of file itkStatisticalShapePointPenalty.h.

◆ m_VariancesNeedsUpdate

template<class TFixedPointSet , class TMovingPointSet >
bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_VariancesNeedsUpdate
private

Definition at line 240 of file itkStatisticalShapePointPenalty.h.



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