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itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType > Class Template Reference

#include <itkTransformBendingEnergyPenaltyTerm.h>

Detailed Description

template<class TFixedImage, class TScalarType>
class itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >

A cost function that calculates the bending energy of a transformation.

The bending energy is defined as the sum of the spatial second order derivatives of the transformation, as defined in [1]. For rigid and affine transformation this energy is always zero.

[1]: D. Rueckert, L. I. Sonoda, C. Hayes, D. L. G. Hill, M. O. Leach, and D. J. Hawkes, "Nonrigid registration using free-form deformations: Application to breast MR images", IEEE Trans. Med. Imaging 18, 712-721, 1999.
[2]: M. Staring and S. Klein, "Itk::Transforms supporting spatial derivatives"", Insight Journal, http://hdl.handle.net/10380/3215.

Definition at line 50 of file itkTransformBendingEnergyPenaltyTerm.h.

Inheritance diagram for itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >:
Inheritance graph
[legend]

Public Types

using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = TransformBendingEnergyPenaltyTerm
 
using Superclass = TransformPenaltyTerm< TFixedImage, TScalarType >
 
- Public Types inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
using ConstPointer = SmartPointer< const Self >
 
using InternalMatrixType = typename TransformType::InternalMatrixType
 
using JacobianOfSpatialHessianType = typename TransformType::JacobianOfSpatialHessianType
 
using JacobianOfSpatialJacobianType = typename TransformType::JacobianOfSpatialJacobianType
 
using Pointer = SmartPointer< Self >
 
using ScalarType = TScalarType
 
using Self = TransformPenaltyTerm
 
using SpatialHessianType = typename TransformType::SpatialHessianType
 
using SpatialJacobianType = typename TransformType::SpatialJacobianType
 
using Superclass = AdvancedImageToImageMetric< TFixedImage, TFixedImage >
 
using TransformType = typename Superclass::AdvancedTransformType
 
- Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
using AdvancedTransformType = AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >
 
using BSplineOrder1TransformPointer = typename BSplineOrder1TransformType::Pointer
 
using BSplineOrder1TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >
 
using BSplineOrder2TransformPointer = typename BSplineOrder2TransformType::Pointer
 
using BSplineOrder2TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >
 
using BSplineOrder3TransformPointer = typename BSplineOrder3TransformType::Pointer
 
using BSplineOrder3TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >
 
using CombinationTransformType = AdvancedCombinationTransform< ScalarType, FixedImageDimension >
 
using ConstPointer = SmartPointer< const Self >
 
using DerivativeValueType = typename DerivativeType::ValueType
 
using FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType
 
using FixedImageLimiterPointer = typename FixedImageLimiterType::Pointer
 
using FixedImageLimiterType = LimiterFunctionBase< RealType, FixedImageDimension >
 
using FixedImageMaskSpatialObject2Type = ImageMaskSpatialObject< Self::FixedImageDimension >
 
using FixedImagePixelType = typename FixedImageType::PixelType
 
using FixedImagePointer = typename FixedImageType::Pointer
 
using HessianType = vnl_sparse_matrix< HessianValueType >
 
using HessianValueType = typename DerivativeType::ValueType
 
using ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer
 
using ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType
 
using ImageSamplerPointer = typename ImageSamplerType::Pointer
 
using ImageSamplerType = ImageSamplerBase< FixedImageType >
 
using MovingImageDerivativeScalesType = FixedArray< double, Self::MovingImageDimension >
 
using MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType
 
using MovingImageLimiterPointer = typename MovingImageLimiterType::Pointer
 
using MovingImageLimiterType = LimiterFunctionBase< RealType, MovingImageDimension >
 
using MovingImageMaskSpatialObject2Type = ImageMaskSpatialObject< Self::MovingImageDimension >
 
using MovingImagePointer = typename MovingImageType::Pointer
 
using MovingImageRegionType = typename MovingImageType::RegionType
 
using NumberOfParametersType = typename AdvancedTransformType::NumberOfParametersType
 
using Pointer = SmartPointer< Self >
 
using ScalarType = typename TransformType::ScalarType
 
using Self = AdvancedImageToImageMetric
 
using Superclass = ImageToImageMetric< TFixedImage, TFixedImage >
 
using ThreaderType = itk::PlatformMultiThreader
 
using ThreadInfoType = typename ThreaderType::WorkUnitInfo
 

Public Member Functions

void AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const override
 
virtual const char * GetClassName () const
 
void GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const override
 
virtual unsigned int GetNumberOfSamplesForSelfHessian () const
 
void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const override
 
MeasureType GetValue (const ParametersType &parameters) const override
 
void GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override
 
virtual void GetValueAndDerivativeSingleThreaded (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
 
 ITK_DISALLOW_COPY_AND_MOVE (TransformBendingEnergyPenaltyTerm)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
virtual void SetNumberOfSamplesForSelfHessian (unsigned int _arg)
 
void ThreadedGetValueAndDerivative (ThreadIdType threadID) override
 
- Public Member Functions inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
virtual const char * GetClassName () const
 
 ITK_DISALLOW_COPY_AND_MOVE (TransformPenaltyTerm)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
virtual void BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
 
virtual const char * GetClassName () const
 
virtual const FixedImageLimiterTypeGetFixedImageLimiter ()
 
virtual double GetFixedLimitRangeRatio () const
 
virtual ImageSamplerTypeGetImageSampler () const
 
virtual const MovingImageDerivativeScalesTypeGetMovingImageDerivativeScales ()
 
virtual const MovingImageLimiterTypeGetMovingImageLimiter ()
 
virtual double GetMovingLimitRangeRatio () const
 
virtual double GetRequiredRatioOfValidSamples () const
 
virtual bool GetScaleGradientWithRespectToMovingImageOrientation () const
 
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
 
const AdvancedTransformTypeGetTransform () const override
 
virtual bool GetUseFixedImageLimiter () const
 
virtual bool GetUseImageSampler () const
 
virtual const boolGetUseMetricSingleThreaded ()
 
virtual bool GetUseMovingImageDerivativeScales () const
 
virtual bool GetUseMovingImageLimiter () const
 
virtual const boolGetUseMultiThread ()
 
void Initialize () override
 
 ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
 
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
 
virtual void SetFixedLimitRangeRatio (double _arg)
 
virtual void SetImageSampler (ImageSamplerType *_arg)
 
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
 
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
 
virtual void SetMovingLimitRangeRatio (double _arg)
 
virtual void SetNumberOfWorkUnits (ThreadIdType numberOfThreads)
 
virtual void SetRequiredRatioOfValidSamples (double _arg)
 
virtual void SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
 
virtual void SetTransform (AdvancedTransformType *arg)
 
virtual void SetUseMetricSingleThreaded (bool _arg)
 
virtual void SetUseMovingImageDerivativeScales (bool _arg)
 
virtual void SetUseMultiThread (bool _arg)
 
virtual void UseMetricSingleThreadedOff ()
 
virtual void UseMetricSingleThreadedOn ()
 
virtual void UseMultiThreadOff ()
 
virtual void UseMultiThreadOn ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Types

using SelfHessianSamplerType = ImageGridSampler< FixedImageType >
 
- Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
using BSplineInterpolatorFloatPointer = typename BSplineInterpolatorFloatType::Pointer
 
using BSplineInterpolatorFloatType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >
 
using BSplineInterpolatorPointer = typename BSplineInterpolatorType::Pointer
 
using BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >
 
using CentralDifferenceGradientFilterPointer = typename CentralDifferenceGradientFilterType::Pointer
 
using CentralDifferenceGradientFilterType = GradientImageFilter< MovingImageType, RealType, RealType >
 
using FixedImageIndexType = typename FixedImageType::IndexType
 
using FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType
 
using FixedImagePointType = typename TransformType::InputPointType
 
using LinearInterpolatorPointer = typename LinearInterpolatorType::Pointer
 
using LinearInterpolatorType = AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >
 
using MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType
 
using MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType
 
using MovingImageIndexType = typename MovingImageType::IndexType
 
using MovingImagePointType = typename TransformType::OutputPointType
 
using NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType
 
using ReducedBSplineInterpolatorPointer = typename ReducedBSplineInterpolatorType::Pointer
 
using ReducedBSplineInterpolatorType = ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >
 

Protected Member Functions

 TransformBendingEnergyPenaltyTerm ()
 
 ~TransformBendingEnergyPenaltyTerm () override=default
 
- Protected Member Functions inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
virtual bool CheckForBSplineTransform2 (BSplineOrder3TransformPointer &bspline) const
 
 TransformPenaltyTerm ()=default
 
 ~TransformPenaltyTerm () override=default
 
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
 AdvancedImageToImageMetric ()
 
virtual void AfterThreadedGetValue (MeasureType &value) const
 
virtual void AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const
 
virtual void CheckForAdvancedTransform ()
 
virtual void CheckForBSplineInterpolator ()
 
virtual void CheckForBSplineTransform () const
 
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
 
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
 
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
 
virtual void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
 
bool FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const
 
virtual void InitializeImageSampler ()
 
virtual void InitializeLimiters ()
 
virtual void InitializeThreadingParameters () const
 
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
 
 itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
 
 itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)
 
 itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
 
 itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)
 
void LaunchGetValueAndDerivativeThreaderCallback () const
 
void LaunchGetValueThreaderCallback () const
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
virtual void SetUseFixedImageLimiter (bool _arg)
 
virtual void SetUseImageSampler (bool _arg)
 
virtual void SetUseMovingImageLimiter (bool _arg)
 
virtual void ThreadedGetValue (ThreadIdType threadID)
 
virtual void ThreadedGetValueAndDerivative (ThreadIdType threadID)
 
MovingImagePointType TransformPoint (const FixedImagePointType &fixedImagePoint) const
 
 ~AdvancedImageToImageMetric () override=default
 

Private Attributes

unsigned int m_NumberOfSamplesForSelfHessian
 

Additional Inherited Members

- Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION AccumulateDerivativesThreaderCallback (void *arg)
 
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION GetValueAndDerivativeThreaderCallback (void *arg)
 
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION GetValueThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
AdvancedTransformType::Pointer m_AdvancedTransform
 
BSplineInterpolatorPointer m_BSplineInterpolator
 
BSplineInterpolatorFloatPointer m_BSplineInterpolatorFloat
 
CentralDifferenceGradientFilterPointer m_CentralDifferenceGradientFilter
 
FixedImageLimiterPointer m_FixedImageLimiter
 
FixedImageLimiterOutputType m_FixedImageMaxLimit
 
FixedImageLimiterOutputType m_FixedImageMinLimit
 
FixedImagePixelType m_FixedImageTrueMax
 
FixedImagePixelType m_FixedImageTrueMin
 
double m_FixedLimitRangeRatio
 
std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]> m_GetValueAndDerivativePerThreadVariables
 
ThreadIdType m_GetValueAndDerivativePerThreadVariablesSize
 
std::unique_ptr< AlignedGetValuePerThreadStruct[]> m_GetValuePerThreadVariables
 
ThreadIdType m_GetValuePerThreadVariablesSize
 
ImageSamplerPointer m_ImageSampler
 
bool m_InterpolatorIsBSpline
 
bool m_InterpolatorIsBSplineFloat
 
bool m_InterpolatorIsLinear
 
bool m_InterpolatorIsReducedBSpline
 
LinearInterpolatorPointer m_LinearInterpolator
 
MovingImageLimiterPointer m_MovingImageLimiter
 
MovingImageLimiterOutputType m_MovingImageMaxLimit
 
MovingImageLimiterOutputType m_MovingImageMinLimit
 
MovingImagePixelType m_MovingImageTrueMax
 
MovingImagePixelType m_MovingImageTrueMin
 
double m_MovingLimitRangeRatio
 
ReducedBSplineInterpolatorPointer m_ReducedBSplineInterpolator
 
MultiThreaderParameterType m_ThreaderMetricParameters
 
bool m_TransformIsAdvanced
 
bool m_TransformIsBSpline
 
bool m_UseMetricSingleThreaded
 
bool m_UseMultiThread
 
bool m_UseOpenMP
 

Member Typedef Documentation

◆ ConstPointer

template<class TFixedImage , class TScalarType >
using itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::ConstPointer = SmartPointer<const Self>

Definition at line 59 of file itkTransformBendingEnergyPenaltyTerm.h.

◆ Pointer

template<class TFixedImage , class TScalarType >
using itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::Pointer = SmartPointer<Self>

Definition at line 58 of file itkTransformBendingEnergyPenaltyTerm.h.

◆ Self

template<class TFixedImage , class TScalarType >
using itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::Self = TransformBendingEnergyPenaltyTerm

Standard ITK stuff.

Definition at line 56 of file itkTransformBendingEnergyPenaltyTerm.h.

◆ SelfHessianSamplerType

template<class TFixedImage , class TScalarType >
using itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::SelfHessianSamplerType = ImageGridSampler<FixedImageType>
protected

Typedefs for SelfHessian

Definition at line 174 of file itkTransformBendingEnergyPenaltyTerm.h.

◆ Superclass

template<class TFixedImage , class TScalarType >
using itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::Superclass = TransformPenaltyTerm<TFixedImage, TScalarType>

Definition at line 57 of file itkTransformBendingEnergyPenaltyTerm.h.

Constructor & Destructor Documentation

◆ TransformBendingEnergyPenaltyTerm()

template<class TFixedImage , class TScalarType >
itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::TransformBendingEnergyPenaltyTerm ( )
protected

The constructor.

◆ ~TransformBendingEnergyPenaltyTerm()

template<class TFixedImage , class TScalarType >
itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::~TransformBendingEnergyPenaltyTerm ( )
overrideprotecteddefault

The destructor.

Member Function Documentation

◆ AfterThreadedGetValueAndDerivative()

template<class TFixedImage , class TScalarType >
void itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::AfterThreadedGetValueAndDerivative ( MeasureType &  value,
DerivativeType &  derivative 
) const
overridevirtual

Gather the values and derivatives from all threads

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >.

◆ GetClassName()

template<class TFixedImage , class TScalarType >
virtual const char * itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::TransformPenaltyTerm< TFixedImage, TScalarType >.

Reimplemented in elastix::TransformBendingEnergyPenalty< TElastix >.

◆ GetDerivative()

template<class TFixedImage , class TScalarType >
void itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::GetDerivative ( const ParametersType &  parameters,
DerivativeType &  derivative 
) const
override

Get the penalty term derivative.

◆ GetNumberOfSamplesForSelfHessian()

template<class TFixedImage , class TScalarType >
virtual unsigned int itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::GetNumberOfSamplesForSelfHessian ( ) const
virtual

◆ GetSelfHessian()

template<class TFixedImage , class TScalarType >
void itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::GetSelfHessian ( const TransformParametersType &  parameters,
HessianType H 
) const
overridevirtual

Experimental feature: compute SelfHessian

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >.

◆ GetValue()

template<class TFixedImage , class TScalarType >
MeasureType itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::GetValue ( const ParametersType &  parameters) const
override

Get the penalty term value.

◆ GetValueAndDerivative()

template<class TFixedImage , class TScalarType >
void itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::GetValueAndDerivative ( const ParametersType &  parameters,
MeasureType &  value,
DerivativeType &  derivative 
) const
override

◆ GetValueAndDerivativeSingleThreaded()

template<class TFixedImage , class TScalarType >
virtual void itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::GetValueAndDerivativeSingleThreaded ( const ParametersType &  parameters,
MeasureType &  value,
DerivativeType &  derivative 
) const
virtual

Get the penalty term value and derivative.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TFixedImage , class TScalarType >
itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::ITK_DISALLOW_COPY_AND_MOVE ( TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType )

◆ itkStaticConstMacro()

template<class TFixedImage , class TScalarType >
itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned int  ,
FixedImageType::ImageDimension   
)

Define the dimension.

◆ New()

template<class TFixedImage , class TScalarType >
static Pointer itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::New ( )
static

Method for creation through the object factory.

◆ SetNumberOfSamplesForSelfHessian()

template<class TFixedImage , class TScalarType >
virtual void itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::SetNumberOfSamplesForSelfHessian ( unsigned int  _arg)
virtual

Default: 100000

◆ ThreadedGetValueAndDerivative()

template<class TFixedImage , class TScalarType >
void itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::ThreadedGetValueAndDerivative ( ThreadIdType  threadID)
overridevirtual

Get value and derivatives for each thread.

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >.

Field Documentation

◆ m_NumberOfSamplesForSelfHessian

template<class TFixedImage , class TScalarType >
unsigned int itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >::m_NumberOfSamplesForSelfHessian
private

Definition at line 183 of file itkTransformBendingEnergyPenaltyTerm.h.



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