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itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType > Class Template Reference

#include <itkTransformToDeterminantOfSpatialJacobianSource.h>

Detailed Description

template<class TOutputImage, class TTransformPrecisionType = double>
class itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >

Generate the spatial Jacobian from a coordinate transform.

This class was inspired on an the itkTransformToDeformationFieldSource class.

Output information (spacing, size and direction) for the output image should be set. This information has the normal defaults of unit spacing, zero origin and identity direction. Optionally, the output information can be obtained from a reference image. If the reference image is provided and UseReferenceImage is On, then the spacing, origin and direction of the reference image will be used.

Since this filter produces an image which is a different size than its input, it needs to override several of the methods defined in ProcessObject in order to properly manage the pipeline execution model. In particular, this filter overrides ProcessObject::GenerateInputRequestedRegion() and ProcessObject::GenerateOutputInformation().

This filter is implemented as a multithreaded filter. It provides a ThreadedGenerateData() method for its implementation.

Author
Marius Staring, Leiden University Medical Center, The Netherlands.

This class was taken from the Insight Journal paper: http://hdl.handle.net/?/?

Definition at line 74 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

Inheritance diagram for itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >:
Inheritance graph
[legend]

Public Types

using ConstPointer = SmartPointer< const Self >
 
using DirectionType = typename OutputImageType::DirectionType
 
using ImageBaseType = ImageBase< Self::ImageDimension >
 
using IndexType = typename OutputImageType::IndexType
 
using OriginType = typename OutputImageType::PointType
 
using OutputImageConstPointer = typename OutputImageType::ConstPointer
 
using OutputImagePointer = typename OutputImageType::Pointer
 
using OutputImageRegionType = typename OutputImageType::RegionType
 
using OutputImageType = TOutputImage
 
using Pointer = SmartPointer< Self >
 
using PointType = typename OutputImageType::PointType
 
using RegionType = typename OutputImageType::RegionType
 
using Self = TransformToDeterminantOfSpatialJacobianSource
 
using SizeType = typename RegionType::SizeType
 
using SpacingType = typename OutputImageType::SpacingType
 
using SpatialJacobianType = typename TransformType::SpatialJacobianType
 
using Superclass = ImageSource< TOutputImage >
 
using TransformPointerType = typename TransformType::ConstPointer
 
using TransformType = AdvancedTransform< TTransformPrecisionType, Self::ImageDimension, Self::ImageDimension >
 

Public Member Functions

void BeforeThreadedGenerateData () override
 
void GenerateOutputInformation () override
 
virtual const char * GetClassName () const
 
ModifiedTimeType GetMTime () const override
 
virtual const DirectionTypeGetOutputDirection ()
 
virtual const IndexTypeGetOutputIndex ()
 
virtual const OriginTypeGetOutputOrigin ()
 
virtual const OutputImageRegionTypeGetOutputRegion ()
 
virtual const SizeTypeGetOutputSize ()
 
virtual const SpacingTypeGetOutputSpacing ()
 
virtual const TransformTypeGetTransform ()
 
 ITK_DISALLOW_COPY_AND_MOVE (TransformToDeterminantOfSpatialJacobianSource)
 
 itkStaticConstMacro (ImageDimension, unsigned int, TOutputImage::ImageDimension)
 
virtual void SetOutputDirection (DirectionType _arg)
 
virtual void SetOutputIndex (const IndexType &index)
 
virtual void SetOutputOrigin (const double *values)
 
virtual void SetOutputOrigin (OriginType _arg)
 
void SetOutputParametersFromImage (const ImageBaseType *image)
 
virtual void SetOutputRegion (OutputImageRegionType _arg)
 
virtual void SetOutputSize (const SizeType &size)
 
virtual void SetOutputSpacing (const double *values)
 
virtual void SetOutputSpacing (SpacingType _arg)
 
virtual void SetTransform (const TransformType *_arg)
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

void LinearGenerateData ()
 
void NonlinearThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) override
 
 TransformToDeterminantOfSpatialJacobianSource ()
 
 ~TransformToDeterminantOfSpatialJacobianSource () override=default
 

Private Attributes

DirectionType m_OutputDirection { DirectionType::GetIdentity() }
 
OriginType m_OutputOrigin {}
 
RegionType m_OutputRegion {}
 
SpacingType m_OutputSpacing { 1.0 }
 
TransformPointerType m_Transform
 

Member Typedef Documentation

◆ ConstPointer

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::ConstPointer = SmartPointer<const Self>

◆ DirectionType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::DirectionType = typename OutputImageType::DirectionType

◆ ImageBaseType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::ImageBaseType = ImageBase<Self::ImageDimension>

Typedefs for base image.

Definition at line 116 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

◆ IndexType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::IndexType = typename OutputImageType::IndexType

◆ OriginType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OriginType = typename OutputImageType::PointType

◆ OutputImageConstPointer

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImageConstPointer = typename OutputImageType::ConstPointer

◆ OutputImagePointer

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImagePointer = typename OutputImageType::Pointer

◆ OutputImageRegionType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImageRegionType = typename OutputImageType::RegionType

◆ OutputImageType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImageType = TOutputImage

◆ Pointer

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::Pointer = SmartPointer<Self>

◆ PointType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::PointType = typename OutputImageType::PointType

◆ RegionType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::RegionType = typename OutputImageType::RegionType

◆ Self

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::Self = TransformToDeterminantOfSpatialJacobianSource

Standard class typedefs.

Definition at line 80 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

◆ SizeType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SizeType = typename RegionType::SizeType

◆ SpacingType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SpacingType = typename OutputImageType::SpacingType

◆ SpatialJacobianType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SpatialJacobianType = typename TransformType::SpatialJacobianType

◆ Superclass

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::Superclass = ImageSource<TOutputImage>

◆ TransformPointerType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformPointerType = typename TransformType::ConstPointer

◆ TransformType

template<class TOutputImage , class TTransformPrecisionType = double>
using itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformType = AdvancedTransform<TTransformPrecisionType, Self::ImageDimension, Self::ImageDimension>

Typedefs for transform.

Definition at line 100 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

Constructor & Destructor Documentation

◆ TransformToDeterminantOfSpatialJacobianSource()

template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformToDeterminantOfSpatialJacobianSource ( )
protected

◆ ~TransformToDeterminantOfSpatialJacobianSource()

template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::~TransformToDeterminantOfSpatialJacobianSource ( )
overrideprotecteddefault

Member Function Documentation

◆ BeforeThreadedGenerateData()

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::BeforeThreadedGenerateData ( )
override

Checking if transform is set. In case of linear transformations, the LinearGenerateData is called.

◆ GenerateOutputInformation()

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GenerateOutputInformation ( )
override

TransformToDeterminantOfSpatialJacobianSource produces a floating value image.

◆ GetClassName()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const char * itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

◆ GetMTime()

template<class TOutputImage , class TTransformPrecisionType = double>
ModifiedTimeType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetMTime ( ) const
override

Compute the Modified Time based on changes to the components.

◆ GetOutputDirection()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const DirectionType & itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputDirection ( )
virtual

◆ GetOutputIndex()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const IndexType & itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputIndex ( )
virtual

Get the start index of the output largest possible region.

◆ GetOutputOrigin()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const OriginType & itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputOrigin ( )
virtual

Get the output image origin.

◆ GetOutputRegion()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const OutputImageRegionType & itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputRegion ( )
virtual

Get the region of the output image.

◆ GetOutputSize()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const SizeType & itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputSize ( )
virtual

Get the size of the output image.

◆ GetOutputSpacing()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const SpacingType & itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputSpacing ( )
virtual

Get the output image spacing.

◆ GetTransform()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const TransformType * itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetTransform ( )
virtual

Get a pointer to the coordinate transform.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::ITK_DISALLOW_COPY_AND_MOVE ( TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >  )

◆ itkStaticConstMacro()

template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::itkStaticConstMacro ( ImageDimension  ,
unsigned int  ,
TOutputImage::ImageDimension   
)

Number of dimensions.

◆ LinearGenerateData()

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::LinearGenerateData ( )
protected

Faster implementation for resampling that works for with linear transformation types. Unthreaded.

◆ New()

template<class TOutputImage , class TTransformPrecisionType = double>
static Pointer itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::New ( )
static

Method for creation through the object factory.

◆ NonlinearThreadedGenerateData()

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::NonlinearThreadedGenerateData ( const OutputImageRegionType outputRegionForThread,
ThreadIdType  threadId 
)
protected

Default implementation for resampling that works for any transformation type.

◆ PrintSelf()

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotected

◆ SetOutputDirection()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputDirection ( DirectionType  _arg)
virtual

Set the output direction cosine matrix.

◆ SetOutputIndex()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputIndex ( const IndexType index)
virtual

Set the start index of the output largest possible region. The default is an index of all zeros.

◆ SetOutputOrigin() [1/2]

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputOrigin ( const double values)
virtual

◆ SetOutputOrigin() [2/2]

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputOrigin ( OriginType  _arg)
virtual

Set the output image origin.

◆ SetOutputParametersFromImage()

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputParametersFromImage ( const ImageBaseType image)

Helper method to set the output parameters based on this image

◆ SetOutputRegion()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputRegion ( OutputImageRegionType  _arg)
virtual

Set the region of the output image.

◆ SetOutputSize()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputSize ( const SizeType size)
virtual

Set the size of the output image.

◆ SetOutputSpacing() [1/2]

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputSpacing ( const double values)
virtual

◆ SetOutputSpacing() [2/2]

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputSpacing ( SpacingType  _arg)
virtual

Set the output image spacing.

◆ SetTransform()

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetTransform ( const TransformType _arg)
virtual

Set the coordinate transformation. Set the coordinate transform to use for resampling. Note that this must be in physical coordinates and it is the output-to-input transform, NOT the input-to-output transform that you might naively expect. By default the filter uses an Identity transform. You must provide a different transform here, before attempting to run the filter, if you do not want to use the default Identity transform.

◆ ThreadedGenerateData()

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::ThreadedGenerateData ( const OutputImageRegionType outputRegionForThread,
ThreadIdType  threadId 
)
overrideprotected

TransformToDeterminantOfSpatialJacobianSource can be implemented as a multithreaded filter.

Field Documentation

◆ m_OutputDirection

template<class TOutputImage , class TTransformPrecisionType = double>
DirectionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputDirection { DirectionType::GetIdentity() }
private

◆ m_OutputOrigin

template<class TOutputImage , class TTransformPrecisionType = double>
OriginType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputOrigin {}
private

◆ m_OutputRegion

template<class TOutputImage , class TTransformPrecisionType = double>
RegionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputRegion {}
private

Member variables.

Definition at line 216 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

◆ m_OutputSpacing

template<class TOutputImage , class TTransformPrecisionType = double>
SpacingType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputSpacing { 1.0 }
private

◆ m_Transform

template<class TOutputImage , class TTransformPrecisionType = double>
TransformPointerType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_Transform
private


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