itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage > Class Template Reference

#include <itkVarianceOverLastDimensionImageMetric.h>

Detailed Description

template<class TFixedImage, class TMovingImage>
class itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >

Compute the sum of variances over the slowest varying dimension in the moving image.

This metric is based on the AdvancedImageToImageMetric. It is templated over the type of the fixed and moving images to be compared.

This metric computes the sum of variances over the slowest varying dimension in the moving image. The spatial positions of the moving image are established through a Transform. Pixel values are taken from the Moving image.

This implementation is based on the AdvancedImageToImageMetric, which means that:

• It uses the ImageSampler-framework
• It makes use of the compact support of B-splines, in case of B-spline transforms.
• Image derivatives are computed using either the B-spline interpolator's implementation or by nearest neighbor interpolation of a precomputed central difference image.
• A minimum number of samples that should map within the moving image (mask) can be specified.

Definition at line 52 of file itkVarianceOverLastDimensionImageMetric.h.

Inheritance diagram for itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >:

Public Types
using	ConstPointer = SmartPointer< const Self >
using	FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType
using	FixedImageLimiterType = LimiterFunctionBase< RealType, FixedImageDimension >
using	FixedImagePixelType = typename FixedImageType::PixelType
using	FixedImageSizeType = typename FixedImageRegionType::SizeType
using	ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer
using	ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType
using	ImageSamplerPointer = typename ImageSamplerType::Pointer
using	ImageSamplerType = ImageSamplerBase< FixedImageType >
using	MovingImageDerivativeScalesType = FixedArray< double, Self::MovingImageDimension >
using	MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType
using	MovingImageLimiterType = LimiterFunctionBase< RealType, MovingImageDimension >
using	MovingImageRegionType = typename MovingImageType::RegionType
using	Pointer = SmartPointer< Self >
using	Self = VarianceOverLastDimensionImageMetric
using	Superclass = AdvancedImageToImageMetric< TFixedImage, TMovingImage >
Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using	AdvancedTransformType = AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >
using	BSplineOrder1TransformPointer = typename BSplineOrder1TransformType::Pointer
using	BSplineOrder1TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >
using	BSplineOrder2TransformPointer = typename BSplineOrder2TransformType::Pointer
using	BSplineOrder2TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >
using	BSplineOrder3TransformPointer = typename BSplineOrder3TransformType::Pointer
using	BSplineOrder3TransformType = AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >
using	CombinationTransformType = AdvancedCombinationTransform< ScalarType, FixedImageDimension >
using	ConstPointer = SmartPointer< const Self >
using	DerivativeValueType = typename DerivativeType::ValueType
using	FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType
using	FixedImageLimiterPointer = typename FixedImageLimiterType::Pointer
using	FixedImageLimiterType = LimiterFunctionBase< RealType, FixedImageDimension >
using	FixedImageMaskSpatialObject2Type = ImageMaskSpatialObject< Self::FixedImageDimension >
using	FixedImagePixelType = typename FixedImageType::PixelType
using	FixedImagePointer = typename FixedImageType::Pointer
using	HessianType = vnl_sparse_matrix< HessianValueType >
using	HessianValueType = typename DerivativeType::ValueType
using	ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer
using	ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType
using	ImageSamplerPointer = typename ImageSamplerType::Pointer
using	ImageSamplerType = ImageSamplerBase< FixedImageType >
using	MovingImageDerivativeScalesType = FixedArray< double, Self::MovingImageDimension >
using	MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType
using	MovingImageLimiterPointer = typename MovingImageLimiterType::Pointer
using	MovingImageLimiterType = LimiterFunctionBase< RealType, MovingImageDimension >
using	MovingImageMaskSpatialObject2Type = ImageMaskSpatialObject< Self::MovingImageDimension >
using	MovingImagePointer = typename MovingImageType::Pointer
using	MovingImageRegionType = typename MovingImageType::RegionType
using	NumberOfParametersType = typename AdvancedTransformType::NumberOfParametersType
using	Pointer = SmartPointer< Self >
using	ScalarType = typename TransformType::ScalarType
using	Self = AdvancedImageToImageMetric
using	Superclass = ImageToImageMetric< TFixedImage, TMovingImage >
using	ThreaderType = itk::PlatformMultiThreader
using	ThreadInfoType = typename ThreaderType::WorkUnitInfo

Public Member Functions
virtual const char *	GetClassName () const
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const override
virtual int	GetNumSamplesLastDimension () const
virtual bool	GetSampleLastDimensionRandomly () const
MeasureType	GetValue (const TransformParametersType &parameters) const override
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
void	Initialize () override
	ITK_DISALLOW_COPY_AND_MOVE (VarianceOverLastDimensionImageMetric)
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	SetGridSize (FixedImageSizeType _arg)
virtual void	SetNumAdditionalSamplesFixed (unsigned int _arg)
virtual void	SetNumSamplesLastDimension (unsigned int _arg)
virtual void	SetReducedDimensionIndex (unsigned int _arg)
virtual void	SetSampleLastDimensionRandomly (bool _arg)
virtual void	SetSubtractMean (bool _arg)
virtual void	SetTransformIsStackTransform (bool _arg)
Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const char *	GetClassName () const
virtual const FixedImageLimiterType *	GetFixedImageLimiter ()
virtual double	GetFixedLimitRangeRatio () const
virtual ImageSamplerType *	GetImageSampler () const
virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()
virtual const MovingImageLimiterType *	GetMovingImageLimiter ()
virtual double	GetMovingLimitRangeRatio () const
virtual double	GetRequiredRatioOfValidSamples () const
virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const
virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
const AdvancedTransformType *	GetTransform () const override
virtual bool	GetUseFixedImageLimiter () const
virtual bool	GetUseImageSampler () const
virtual const bool &	GetUseMetricSingleThreaded ()
virtual bool	GetUseMovingImageDerivativeScales () const
virtual bool	GetUseMovingImageLimiter () const
virtual const bool &	GetUseMultiThread ()
void	Initialize () override
	ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric)
	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void	SetFixedLimitRangeRatio (double _arg)
virtual void	SetImageSampler (ImageSamplerType *_arg)
virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void	SetMovingLimitRangeRatio (double _arg)
virtual void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)
virtual void	SetRequiredRatioOfValidSamples (double _arg)
virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
virtual void	SetTransform (AdvancedTransformType *arg)
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	SetUseMovingImageDerivativeScales (bool _arg)
virtual void	SetUseMultiThread (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()
virtual void	UseMultiThreadOff ()
virtual void	UseMultiThreadOn ()

Static Public Member Functions
static Pointer	New ()

Protected Types
using	BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >
using	CentralDifferenceGradientFilterType = GradientImageFilter< MovingImageType, RealType, RealType >
using	FixedImageContinuousIndexType = typename itk::ContinuousIndex< CoordinateRepresentationType, FixedImageDimension >
using	FixedImageIndexType = typename FixedImageType::IndexType
using	FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType
using	FixedImagePointType = typename TransformType::InputPointType
using	MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType
using	MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType
using	MovingImageIndexType = typename MovingImageType::IndexType
using	MovingImagePointType = typename TransformType::OutputPointType
using	NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType
Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using	BSplineInterpolatorFloatPointer = typename BSplineInterpolatorFloatType::Pointer
using	BSplineInterpolatorFloatType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >
using	BSplineInterpolatorPointer = typename BSplineInterpolatorType::Pointer
using	BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >
using	CentralDifferenceGradientFilterPointer = typename CentralDifferenceGradientFilterType::Pointer
using	CentralDifferenceGradientFilterType = GradientImageFilter< MovingImageType, RealType, RealType >
using	FixedImageIndexType = typename FixedImageType::IndexType
using	FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType
using	FixedImagePointType = typename TransformType::InputPointType
using	LinearInterpolatorPointer = typename LinearInterpolatorType::Pointer
using	LinearInterpolatorType = AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >
using	MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType
using	MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType
using	MovingImageIndexType = typename MovingImageType::IndexType
using	MovingImagePointType = typename TransformType::OutputPointType
using	NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType
using	ReducedBSplineInterpolatorPointer = typename ReducedBSplineInterpolatorType::Pointer
using	ReducedBSplineInterpolatorType = ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >

Protected Member Functions
void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const override
void	PrintSelf (std::ostream &os, Indent indent) const override
	VarianceOverLastDimensionImageMetric ()
	~VarianceOverLastDimensionImageMetric () override=default
Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
	AdvancedImageToImageMetric ()
virtual void	AfterThreadedGetValue (MeasureType &value) const
virtual void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const
virtual void	CheckForAdvancedTransform ()
virtual void	CheckForBSplineInterpolator ()
virtual void	CheckForBSplineTransform () const
virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
bool	FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const
virtual void	InitializeImageSampler ()
virtual void	InitializeLimiters ()
virtual void	InitializeThreadingParameters () const
virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)
void	LaunchGetValueAndDerivativeThreaderCallback () const
void	LaunchGetValueThreaderCallback () const
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual void	SetUseFixedImageLimiter (bool _arg)
virtual void	SetUseImageSampler (bool _arg)
virtual void	SetUseMovingImageLimiter (bool _arg)
virtual void	ThreadedGetValue (ThreadIdType threadID)
virtual void	ThreadedGetValueAndDerivative (ThreadIdType threadID)
MovingImagePointType	TransformPoint (const FixedImagePointType &fixedImagePoint) const
	~AdvancedImageToImageMetric () override=default

Private Member Functions
void	SampleRandom (const int n, const int m, std::vector< int > &numbers) const

Private Attributes
FixedImageSizeType	m_GridSize
float	m_InitialVariance
unsigned int	m_NumAdditionalSamplesFixed
unsigned int	m_NumSamplesLastDimension { 10 }
unsigned int	m_ReducedDimensionIndex
bool	m_SampleLastDimensionRandomly { false }
bool	m_SubtractMean { false }
bool	m_TransformIsStackTransform { false }

Additional Inherited Members
Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)
Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer	m_AdvancedTransform { nullptr }
BSplineInterpolatorPointer	m_BSplineInterpolator { nullptr }
BSplineInterpolatorFloatPointer	m_BSplineInterpolatorFloat { nullptr }
CentralDifferenceGradientFilterPointer	m_CentralDifferenceGradientFilter { nullptr }
FixedImageLimiterPointer	m_FixedImageLimiter { nullptr }
FixedImageLimiterOutputType	m_FixedImageMaxLimit { 1 }
FixedImageLimiterOutputType	m_FixedImageMinLimit { 0 }
FixedImagePixelType	m_FixedImageTrueMax { 1 }
FixedImagePixelType	m_FixedImageTrueMin { 0 }
double	m_FixedLimitRangeRatio { 0.01 }
std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]>	m_GetValueAndDerivativePerThreadVariables
ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize { 0 }
std::unique_ptr< AlignedGetValuePerThreadStruct[]>	m_GetValuePerThreadVariables { nullptr }
ThreadIdType	m_GetValuePerThreadVariablesSize { 0 }
ImageSamplerPointer	m_ImageSampler { nullptr }
bool	m_InterpolatorIsBSpline { false }
bool	m_InterpolatorIsBSplineFloat { false }
bool	m_InterpolatorIsLinear { false }
bool	m_InterpolatorIsReducedBSpline { false }
LinearInterpolatorPointer	m_LinearInterpolator { nullptr }
MovingImageLimiterPointer	m_MovingImageLimiter { nullptr }
MovingImageLimiterOutputType	m_MovingImageMaxLimit { 1 }
MovingImageLimiterOutputType	m_MovingImageMinLimit { 0 }
MovingImagePixelType	m_MovingImageTrueMax { 1 }
MovingImagePixelType	m_MovingImageTrueMin { 0 }
double	m_MovingLimitRangeRatio { 0.01 }
ReducedBSplineInterpolatorPointer	m_ReducedBSplineInterpolator { nullptr }
MultiThreaderParameterType	m_ThreaderMetricParameters
bool	m_TransformIsAdvanced { false }
bool	m_TransformIsBSpline { false }
bool	m_UseMetricSingleThreaded { true }
bool	m_UseMultiThread { false }
bool	m_UseOpenMP

Member Typedef Documentation

BSplineInterpolatorType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::BSplineInterpolatorType = BSplineInterpolateImageFunction<MovingImageType, CoordinateRepresentationType, double>

protected

Typedefs used for computing image derivatives.

Definition at line 321 of file itkAdvancedImageToImageMetric.h.

CentralDifferenceGradientFilterType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::CentralDifferenceGradientFilterType = GradientImageFilter<MovingImageType, RealType, RealType>

protected

Definition at line 333 of file itkAdvancedImageToImageMetric.h.

ConstPointer

template<class TFixedImage , class TMovingImage >

using itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::ConstPointer = SmartPointer<const Self>

Definition at line 62 of file itkVarianceOverLastDimensionImageMetric.h.

FixedImageContinuousIndexType

template<class TFixedImage , class TMovingImage >

using itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::FixedImageContinuousIndexType = typename itk::ContinuousIndex<CoordinateRepresentationType, FixedImageDimension>

protected

Definition at line 165 of file itkVarianceOverLastDimensionImageMetric.h.

FixedImageIndexType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexType = typename FixedImageType::IndexType

protected

Protected Typedefs Typedefs for indices and points.

Definition at line 313 of file itkAdvancedImageToImageMetric.h.

FixedImageIndexValueType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType

protected

Definition at line 314 of file itkAdvancedImageToImageMetric.h.

FixedImageLimiterOutputType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType

Definition at line 151 of file itkAdvancedImageToImageMetric.h.

FixedImageLimiterType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterType = LimiterFunctionBase<RealType, FixedImageDimension>

Typedefs for Limiter support.

Definition at line 149 of file itkAdvancedImageToImageMetric.h.

FixedImagePixelType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType = typename FixedImageType::PixelType

Some useful extra typedefs.

Definition at line 138 of file itkAdvancedImageToImageMetric.h.

FixedImagePointType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType = typename TransformType::InputPointType

protected

Definition at line 316 of file itkAdvancedImageToImageMetric.h.

FixedImageSizeType

template<class TFixedImage , class TMovingImage >

using itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::FixedImageSizeType = typename FixedImageRegionType::SizeType

Definition at line 65 of file itkVarianceOverLastDimensionImageMetric.h.

ImageSampleContainerPointer

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer

Definition at line 146 of file itkAdvancedImageToImageMetric.h.

ImageSampleContainerType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType

Definition at line 145 of file itkAdvancedImageToImageMetric.h.

ImageSamplerPointer

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerPointer = typename ImageSamplerType::Pointer

Definition at line 144 of file itkAdvancedImageToImageMetric.h.

ImageSamplerType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerType = ImageSamplerBase<FixedImageType>

Typedefs for the ImageSampler.

Definition at line 143 of file itkAdvancedImageToImageMetric.h.

MovingImageContinuousIndexType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType

protected

Definition at line 318 of file itkAdvancedImageToImageMetric.h.

MovingImageDerivativeScalesType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeScalesType = FixedArray<double, Self::MovingImageDimension>

Definition at line 140 of file itkAdvancedImageToImageMetric.h.

MovingImageDerivativeType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType

protected

Definition at line 332 of file itkAdvancedImageToImageMetric.h.

MovingImageIndexType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageIndexType = typename MovingImageType::IndexType

protected

Definition at line 315 of file itkAdvancedImageToImageMetric.h.

MovingImageLimiterOutputType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType

Definition at line 154 of file itkAdvancedImageToImageMetric.h.

MovingImageLimiterType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterType = LimiterFunctionBase<RealType, MovingImageDimension>

Definition at line 152 of file itkAdvancedImageToImageMetric.h.

MovingImagePointType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType = typename TransformType::OutputPointType

protected

Definition at line 317 of file itkAdvancedImageToImageMetric.h.

MovingImageRegionType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageRegionType = typename MovingImageType::RegionType

Definition at line 139 of file itkAdvancedImageToImageMetric.h.

NonZeroJacobianIndicesType

template<class TFixedImage , class TMovingImage >

using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType

protected

Typedefs for support of sparse Jacobians and compact support of transformations.

Definition at line 337 of file itkAdvancedImageToImageMetric.h.

Pointer

template<class TFixedImage , class TMovingImage >

using itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::Pointer = SmartPointer<Self>

Definition at line 61 of file itkVarianceOverLastDimensionImageMetric.h.

Self

template<class TFixedImage , class TMovingImage >

using itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::Self = VarianceOverLastDimensionImageMetric

Standard class typedefs.

Definition at line 59 of file itkVarianceOverLastDimensionImageMetric.h.

Superclass

template<class TFixedImage , class TMovingImage >

using itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::Superclass = AdvancedImageToImageMetric<TFixedImage, TMovingImage>

Definition at line 60 of file itkVarianceOverLastDimensionImageMetric.h.

Constructor & Destructor Documentation

VarianceOverLastDimensionImageMetric()

template<class TFixedImage , class TMovingImage >

itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::VarianceOverLastDimensionImageMetric ( )

protected

~VarianceOverLastDimensionImageMetric()

template<class TFixedImage , class TMovingImage >

itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::~VarianceOverLastDimensionImageMetric ( )

overrideprotecteddefault

Member Function Documentation

EvaluateTransformJacobianInnerProduct()

template<class TFixedImage , class TMovingImage >

void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::EvaluateTransformJacobianInnerProduct ( const TransformJacobianType &  jacobian, const MovingImageDerivativeType &  movingImageDerivative, DerivativeType &  imageJacobian  ) const

overrideprotectedvirtual

Computes the innerproduct of transform Jacobian with moving image gradient. The results are stored in imageJacobian, which is supposed to have the right size (same length as Jacobian's number of columns).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

GetClassName()

template<class TFixedImage , class TMovingImage >

virtual const char * itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in elastix::VarianceOverLastDimensionMetric< TElastix >.

GetDerivative()

template<class TFixedImage , class TMovingImage >

void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::GetDerivative ( const TransformParametersType &  parameters, DerivativeType &  derivative  ) const

override

Get the derivatives of the match measure.

GetNumSamplesLastDimension()

template<class TFixedImage , class TMovingImage >

virtual int itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::GetNumSamplesLastDimension ( ) const

virtual

GetSampleLastDimensionRandomly()

template<class TFixedImage , class TMovingImage >

virtual bool itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::GetSampleLastDimensionRandomly ( ) const

virtual

Get functions.

GetValue()

template<class TFixedImage , class TMovingImage >

MeasureType itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::GetValue ( const TransformParametersType &  parameters ) const

override

Get the value for single valued optimizers.

GetValueAndDerivative()

template<class TFixedImage , class TMovingImage >

void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative ( const TransformParametersType &  parameters, MeasureType &  Value, DerivativeType &  Derivative  ) const

override

Get value and derivatives for multiple valued optimizers.

Initialize()

template<class TFixedImage , class TMovingImage >

void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::Initialize ( )

override

Initialize the Metric by making sure that all the components are present and plugged together correctly.

• Call the superclass' implementation.
  

ITK_DISALLOW_COPY_AND_MOVE()

template<class TFixedImage , class TMovingImage >

itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::ITK_DISALLOW_COPY_AND_MOVE

(

VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >

)

itkStaticConstMacro() [1/2]

template<class TFixedImage , class TMovingImage >

itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

itkStaticConstMacro() [2/2]

template<class TFixedImage , class TMovingImage >

itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

The moving image dimension.

New()

template<class TFixedImage , class TMovingImage >

static Pointer itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::New ( )

static

Method for creation through the object factory.

PrintSelf()

template<class TFixedImage , class TMovingImage >

void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotected

SampleRandom()

template<class TFixedImage , class TMovingImage >

void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::SampleRandom ( const int  n, const int  m, std::vector< int > &  numbers  ) const

private

Sample n random numbers from 0..m and add them to the vector.

SetGridSize()

template<class TFixedImage , class TMovingImage >

virtual void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::SetGridSize ( FixedImageSizeType  _arg )

virtual

SetNumAdditionalSamplesFixed()

template<class TFixedImage , class TMovingImage >

virtual void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::SetNumAdditionalSamplesFixed ( unsigned int  _arg )

virtual

SetNumSamplesLastDimension()

template<class TFixedImage , class TMovingImage >

virtual void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::SetNumSamplesLastDimension ( unsigned int  _arg )

virtual

SetReducedDimensionIndex()

template<class TFixedImage , class TMovingImage >

virtual void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::SetReducedDimensionIndex ( unsigned int  _arg )

virtual

SetSampleLastDimensionRandomly()

template<class TFixedImage , class TMovingImage >

virtual void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::SetSampleLastDimensionRandomly ( bool  _arg )

virtual

Set functions.

SetSubtractMean()

template<class TFixedImage , class TMovingImage >

virtual void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::SetSubtractMean ( bool  _arg )

virtual

SetTransformIsStackTransform()

template<class TFixedImage , class TMovingImage >

virtual void itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::SetTransformIsStackTransform ( bool  _arg )

virtual

Field Documentation

m_GridSize

template<class TFixedImage , class TMovingImage >

FixedImageSizeType itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::m_GridSize

private

GridSize of B-spline transform.

Definition at line 200 of file itkVarianceOverLastDimensionImageMetric.h.

m_InitialVariance

template<class TFixedImage , class TMovingImage >

float itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::m_InitialVariance

private

Initial variance in last dimension, used as normalization factor.

Definition at line 197 of file itkVarianceOverLastDimensionImageMetric.h.

m_NumAdditionalSamplesFixed

template<class TFixedImage , class TMovingImage >

unsigned int itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::m_NumAdditionalSamplesFixed

private

Definition at line 190 of file itkVarianceOverLastDimensionImageMetric.h.

m_NumSamplesLastDimension

template<class TFixedImage , class TMovingImage >

unsigned int itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::m_NumSamplesLastDimension { 10 }

private

Definition at line 189 of file itkVarianceOverLastDimensionImageMetric.h.

m_ReducedDimensionIndex

template<class TFixedImage , class TMovingImage >

unsigned int itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::m_ReducedDimensionIndex

private

Definition at line 191 of file itkVarianceOverLastDimensionImageMetric.h.

m_SampleLastDimensionRandomly

template<class TFixedImage , class TMovingImage >

bool itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::m_SampleLastDimensionRandomly { false }

private

Variables to control random sampling in last dimension.

Definition at line 188 of file itkVarianceOverLastDimensionImageMetric.h.

m_SubtractMean

template<class TFixedImage , class TMovingImage >

bool itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::m_SubtractMean { false }

private

Bool to determine if we want to subtract the mean derivate from the derivative elements.

Definition at line 194 of file itkVarianceOverLastDimensionImageMetric.h.

m_TransformIsStackTransform

template<class TFixedImage , class TMovingImage >

bool itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::m_TransformIsStackTransform { false }

private

Bool to indicate if the transform used is a stacktransform. Set by elx files.

Definition at line 203 of file itkVarianceOverLastDimensionImageMetric.h.