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elxTransformixMain.h
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1/*=========================================================================
2 *
3 * Copyright UMC Utrecht and contributors
4 *
5 * Licensed under the Apache License, Version 2.0 (the "License");
6 * you may not use this file except in compliance with the License.
7 * You may obtain a copy of the License at
8 *
9 * http://www.apache.org/licenses/LICENSE-2.0.txt
10 *
11 * Unless required by applicable law or agreed to in writing, software
12 * distributed under the License is distributed on an "AS IS" BASIS,
13 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14 * See the License for the specific language governing permissions and
15 * limitations under the License.
16 *
17 *=========================================================================*/
18#ifndef elxTransformixMain_h
19#define elxTransformixMain_h
20
21#include "elxElastixMain.h"
22#include <itkTransformBase.h>
23
24namespace elastix
25{
40{
41public:
43
47 using Pointer = itk::SmartPointer<Self>;
48 using ConstPointer = itk::SmartPointer<const Self>;
49
51 itkNewMacro(Self);
52
55
61
68
78
81
83 int
84 Run() override;
85
87 int
88 Run(const ArgumentMapType & argmap) override;
89
90 int
91 Run(const ArgumentMapType & argmap, const ParameterMapType & inputMap) override;
92
94 int
95 Run(const ArgumentMapType & argmap, const std::vector<ParameterMapType> & inputMaps, itk::TransformBase * = nullptr);
96
98 virtual void
100
101protected:
102 TransformixMain() = default;
104
108 int
109 InitDBIndex() override;
110
111private:
113 int
114 RunWithTransform(itk::TransformBase *);
115};
116
117} // end namespace elastix
118
119#endif // end #ifndef elxTransformixMain_h
A class with all functionality to configure elastix.
ComponentDatabase::ComponentDescriptionType ComponentDescriptionType
itk::ParameterMapInterface::ParameterMapType ParameterMapType
Configuration::CommandLineArgumentMapType ArgumentMapType
ElastixBase::DataObjectContainerType DataObjectContainerType
ElastixBase::DataObjectContainerPointer DataObjectContainerPointer
itk::DataObject::Pointer DataObjectPointer
ElastixBase::ObjectContainerPointer ObjectContainerPointer
itk::Object::Pointer ObjectPointer
ComponentDatabase::PtrToCreator PtrToCreator
ComponentDatabase::PixelTypeDescriptionType PixelTypeDescriptionType
ElastixBase::ObjectContainerType ObjectContainerType
ComponentDatabase::Pointer ComponentDatabasePointer
A class with all functionality to configure transformix.
int Run(const ArgumentMapType &argmap, const std::vector< ParameterMapType > &inputMaps, itk::TransformBase *=nullptr)
int RunWithTransform(itk::TransformBase *)
itk::SmartPointer< const Self > ConstPointer
itk::ParameterMapInterface::ParameterMapType ParameterMapType
Configuration::CommandLineArgumentMapType ArgumentMapType
ElastixBase::DataObjectContainerType DataObjectContainerType
int Run(const ArgumentMapType &argmap, const ParameterMapType &inputMap) override
int InitDBIndex() override
itk::SmartPointer< Self > Pointer
virtual void SetInputImageContainer(DataObjectContainerType *inputImageContainer)
int Run(const ArgumentMapType &argmap) override
ITK_DISALLOW_COPY_AND_MOVE(TransformixMain)


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