itkAdvancedBSplineDeformableTransformBase.h

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 *
 *  Copyright UMC Utrecht and contributors
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *        http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
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#ifndef itkAdvancedBSplineDeformableTransformBase_h
#define itkAdvancedBSplineDeformableTransformBase_h
 
#include "itkAdvancedTransform.h"
#include "itkImage.h"
#include "itkImageRegion.h"
 
namespace itk
{
 
template <class TScalarType = double, // Data type for scalars
          unsigned int NDimensions = 3>
// Number of dimensions
class ITK_TEMPLATE_EXPORT AdvancedBSplineDeformableTransformBase
  : public AdvancedTransform<TScalarType, NDimensions, NDimensions>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(AdvancedBSplineDeformableTransformBase);
 
  using Self = AdvancedBSplineDeformableTransformBase;
  using Superclass = AdvancedTransform<TScalarType, NDimensions, NDimensions>;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
 
  itkTypeMacro(AdvancedBSplineDeformableTransformBase, AdvancedTransform);
 
  itkStaticConstMacro(SpaceDimension, unsigned int, NDimensions);
 
  static constexpr unsigned int NumberOfFixedParameters = NDimensions * (NDimensions + 3);
 
  using typename Superclass::ParametersType;
  using typename Superclass::FixedParametersType;
  using typename Superclass::ParametersValueType;
  using typename Superclass::NumberOfParametersType;
  using typename Superclass::DerivativeType;
  using typename Superclass::JacobianType;
  using typename Superclass::ScalarType;
  using typename Superclass::InputPointType;
  using typename Superclass::OutputPointType;
  using typename Superclass::InputVectorType;
  using typename Superclass::OutputVectorType;
  using typename Superclass::InputVnlVectorType;
  using typename Superclass::OutputVnlVectorType;
  using typename Superclass::InputCovariantVectorType;
  using typename Superclass::OutputCovariantVectorType;
  using typename Superclass::TransformCategoryEnum;
 
  using typename Superclass::NonZeroJacobianIndicesType;
  using typename Superclass::SpatialJacobianType;
  using typename Superclass::JacobianOfSpatialJacobianType;
  using typename Superclass::SpatialHessianType;
  using typename Superclass::JacobianOfSpatialHessianType;
  using typename Superclass::InternalMatrixType;
  using typename Superclass::MovingImageGradientType;
  using typename Superclass::MovingImageGradientValueType;
 
  /* Creates a `BSplineDeformableTransform` of the specified derived type and spline order. */
  template <template <class, unsigned, unsigned> class TBSplineDeformableTransform>
  static Pointer
  Create(const unsigned splineOrder)
  {
    switch (splineOrder)
    {
      case 1:
      {
        return TBSplineDeformableTransform<TScalarType, NDimensions, 1>::New();
      }
      case 2:
      {
        return TBSplineDeformableTransform<TScalarType, NDimensions, 2>::New();
      }
      case 3:
      {
        return TBSplineDeformableTransform<TScalarType, NDimensions, 3>::New();
      }
    }
    itkGenericExceptionMacro(<< "ERROR: The provided spline order (" << splineOrder << ") is not supported.");
  }
 
 
  unsigned
  GetSplineOrder() const
  {
    return m_SplineOrder;
  }
 
 
  void
  SetParameters(const ParametersType & parameters) override;
 
  void
  SetFixedParameters(const FixedParametersType & parameters) override;
 
  void
  SetParametersByValue(const ParametersType & parameters) override;
 
  void
  SetIdentity();
 
  const ParametersType &
  GetParameters() const override;
 
  const FixedParametersType &
  GetFixedParameters() const override;
 
  using PixelType = typename ParametersType::ValueType;
  using ImageType = Image<PixelType, Self::SpaceDimension>;
  using ImagePointer = typename ImageType::Pointer;
 
  virtual const ImagePointer *
  GetCoefficientImages() const
  {
    return this->m_CoefficientImages;
  }
 
  virtual void
  SetCoefficientImages(ImagePointer images[]);
 
  using RegionType = ImageRegion<Self::SpaceDimension>;
 
  using IndexType = typename RegionType::IndexType;
  using SizeType = typename RegionType::SizeType;
  using SpacingType = typename ImageType::SpacingType;
  using DirectionType = typename ImageType::DirectionType;
  using OriginType = typename ImageType::PointType;
  using GridOffsetType = IndexType;
 
  virtual void
  SetGridRegion(const RegionType & region) = 0;
 
  itkGetConstMacro(GridRegion, RegionType);
 
  virtual void
  SetGridSpacing(const SpacingType & spacing);
 
  itkGetConstMacro(GridSpacing, SpacingType);
 
  virtual void
  SetGridDirection(const DirectionType & direction);
 
  itkGetConstMacro(GridDirection, DirectionType);
 
  virtual void
  SetGridOrigin(const OriginType & origin);
 
  itkGetConstMacro(GridOrigin, OriginType);
 
  using ParameterIndexArrayType = Array<unsigned long>;
 
  OutputVectorType
  TransformVector(const InputVectorType &) const override
  {
    itkExceptionMacro(<< "Method not applicable for deformable transform.");
  }
 
 
  OutputVnlVectorType
  TransformVector(const InputVnlVectorType &) const override
  {
    itkExceptionMacro(<< "Method not applicable for deformable transform. ");
  }
 
 
  OutputCovariantVectorType
  TransformCovariantVector(const InputCovariantVectorType &) const override
  {
    itkExceptionMacro(<< "Method not applicable for deformable transform. ");
  }
 
 
  NumberOfParametersType
  GetNumberOfParameters() const override;
 
  virtual NumberOfParametersType
  GetNumberOfParametersPerDimension() const;
 
  itkGetConstReferenceMacro(ValidRegion, RegionType);
 
  bool
  IsLinear() const override
  {
    return false;
  }
 
  TransformCategoryEnum
  GetTransformCategory() const override
  {
    return TransformCategoryEnum::BSpline;
  }
 
 
  virtual unsigned int
  GetNumberOfAffectedWeights() const = 0;
 
  NumberOfParametersType
  GetNumberOfNonZeroJacobianIndices() const override = 0;
 
  using ContinuousIndexType = ContinuousIndex<ScalarType, SpaceDimension>;
 
protected:
  void
  PrintSelf(std::ostream & os, Indent indent) const override;
 
  AdvancedBSplineDeformableTransformBase() = delete;
  explicit AdvancedBSplineDeformableTransformBase(const unsigned splineOrder);
  ~AdvancedBSplineDeformableTransformBase() override = default;
 
  void
  WrapAsImages();
 
  ContinuousIndexType
  TransformPointToContinuousGridIndex(const InputPointType & point) const;
 
  void
  UpdatePointIndexConversions();
 
  virtual void
  ComputeNonZeroJacobianIndices(NonZeroJacobianIndicesType & nonZeroJacobianIndices,
                                const RegionType &           supportRegion) const = 0;
 
  virtual bool
  InsideValidRegion(const ContinuousIndexType & index) const;
 
private:
  const unsigned m_SplineOrder;
 
protected:
  ImagePointer m_CoefficientImages[NDimensions];
 
  RegionType     m_GridRegion{};
  SpacingType    m_GridSpacing{ 1.0 }; // default spacing is all ones
  DirectionType  m_GridDirection{ DirectionType::GetIdentity() };
  OriginType     m_GridOrigin{};
  GridOffsetType m_GridOffsetTable{};
 
  DirectionType                                     m_PointToIndexMatrix;
  SpatialJacobianType                               m_PointToIndexMatrix2;
  DirectionType                                     m_PointToIndexMatrixTransposed;
  SpatialJacobianType                               m_PointToIndexMatrixTransposed2;
  FixedArray<ScalarType, NDimensions>               m_PointToIndexMatrixDiagonal;
  FixedArray<ScalarType, NDimensions * NDimensions> m_PointToIndexMatrixDiagonalProducts;
  DirectionType                                     m_IndexToPoint;
  bool                                              m_PointToIndexMatrixIsDiagonal;
 
  RegionType m_ValidRegion;
 
  unsigned long       m_Offset;
  SizeType            m_SupportSize;
  ContinuousIndexType m_ValidRegionBegin;
  ContinuousIndexType m_ValidRegionEnd;
 
  const ParametersType * m_InputParametersPointer;
 
  using JacobianPixelType = typename JacobianType::ValueType;
  using JacobianImageType = Image<JacobianPixelType, Self::SpaceDimension>;
 
  typename JacobianImageType::Pointer m_JacobianImage[NDimensions];
 
  mutable IndexType m_LastJacobianIndex;
 
  ImagePointer m_WrappedImage[NDimensions];
 
  ParametersType m_InternalParametersBuffer;
 
  void
  UpdateGridOffsetTable();
};
 
} // namespace itk
 
#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkAdvancedBSplineDeformableTransformBase.hxx"
#endif
 
#endif /* itkAdvancedBSplineDeformableTransformBase_h */